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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SERBP1
ENSSSCG00000003798
ENSG00000142864
SERPINE1 mRNA binding protein 1
Low tissue specificity
Detected in all
SETD1A
ENSSSCG00000007782
ENSG00000099381
SET domain containing 1A
Low tissue specificity
Detected in all
SETD1B
ENSSSCG00000009806
ENSG00000139718
SET domain containing 1B
Low tissue specificity
Detected in all
SETD2
ENSSSCG00000011332
ENSG00000181555
SET domain containing 2
Low tissue specificity
Detected in all
SETD4
ENSSSCG00000028883
ENSG00000185917
SET domain containing 4
Low tissue specificity
Detected in all
SETD5
ENSSSCG00000011540
ENSG00000168137
SET domain containing 5
Low tissue specificity
Detected in all
SETD6
ENSSSCG00000026505
ENSG00000103037
SET domain containing 6
Low tissue specificity
Detected in all
SETDB1
ENSSSCG00000006645
ENSG00000143379
SET domain bifurcated 1
Low tissue specificity
Detected in all
SETDB2
ENSSSCG00000009395
ENSG00000136169
SET domain bifurcated 2
Low tissue specificity
Detected in all
SETX
ENSSSCG00000005724
ENSG00000107290
Senataxin
Tissue enhanced
Detected in all
testis:
61.5
SF1
ENSSSCG00000013021
ENSG00000168066
Splicing factor 1
Low tissue specificity
Detected in all
SF3A1
ENSSSCG00000010002
ENSG00000099995
Splicing factor 3a subunit 1
Low tissue specificity
Detected in all
SF3A3
ENSSSCG00000003643
ENSG00000183431
Splicing factor 3a subunit 3
Low tissue specificity
Detected in all
SF3B1
ENSSSCG00000016075
ENSG00000115524
Splicing factor 3b subunit 1
Low tissue specificity
Detected in all
SF3B3
ENSSSCG00000025323
ENSG00000189091
Splicing factor 3b subunit 3
Low tissue specificity
Detected in all
SFMBT2
ENSSSCG00000024480
ENSG00000198879
Scm like with four mbt domains 2
Tissue enhanced
Detected in all
adrenal gland:
55.4
SFPQ
ENSSSCG00000035690
ENSG00000116560
Splicing factor proline and glutamine rich
Low tissue specificity
Detected in all
SFSWAP
ENSSSCG00000009744
ENSG00000061936
Splicing factor SWAP
Low tissue specificity
Detected in all
SGF29
ENSSSCG00000022778
ENSG00000176476
SAGA complex associated factor 29
Tissue enhanced
Detected in all
testis:
70.2
SH2B1
ENSSSCG00000007804
ENSG00000178188
SH2B adaptor protein 1
Low tissue specificity
Detected in all
SHPRH
ENSSSCG00000004120
ENSG00000146414
SNF2 histone linker PHD RING helicase
Low tissue specificity
Detected in all
SIDT2
ENSSSCG00000015074
ENSG00000149577
SID1 transmembrane family member 2
Low tissue specificity
Detected in all
SIGIRR
ENSSSCG00000024389
ENSG00000185187
Single Ig IL-1-related receptor
Low tissue specificity
Detected in many
SIN3A
ENSSSCG00000001880
ENSG00000169375
SIN3 transcription regulator family member A
Low tissue specificity
Detected in all
SIRT1
ENSSSCG00000010235
ENSG00000096717
Sirtuin 1
Low tissue specificity
Detected in all
SIRT6
ENSSSCG00000013496
ENSG00000077463
NAD-dependent protein deacetylase sirtuin-6
Low tissue specificity
Detected in all
SIRT7
ENSSSCG00000034695
ENSG00000187531
NAD-dependent protein deacetylase sirtuin-7
Tissue enhanced
Detected in all
stomach:
45.2
SKA3
ENSSSCG00000028249
ENSG00000165480
Spindle and kinetochore associated complex subunit 3
Low tissue specificity
Detected in all
SKIDA1
ENSSSCG00000011087
ENSG00000180592
SKI/DACH domain containing 1
Tissue enhanced
Detected in all
skeletal muscle:
28.1
SKP2
ENSSSCG00000016835
ENSG00000145604
S-phase kinase-associated protein 2
Tissue enhanced
Detected in all
heart:
40.4
SLC10A7
ENSSSCG00000009035
ENSG00000120519
Sodium/bile acid cotransporter 7
Low tissue specificity
Detected in all
SLC25A38
ENSSSCG00000029708
ENSG00000144659
Solute carrier family 25 member 38
Low tissue specificity
Detected in all
SLC26A1
ENSSSCG00000035739
ENSG00000145217
Solute carrier family 26 member 1
Group enriched
Detected in many
kidney:
55.9
liver:
48.3
SLC29A3
ENSSSCG00000010277
ENSG00000198246
Solute carrier family 29 member 3
Tissue enhanced
Detected in many
thyroid gland:
26.6
SLC35B3
ENSSSCG00000001033
ENSG00000124786
Solute carrier family 35 member B3
Low tissue specificity
Detected in all
SLC35C2
ENSSSCG00000022777
ENSG00000080189
Solute carrier family 35, member C2
Low tissue specificity
Detected in all
SLC38A10
ENSSSCG00000022317
ENSG00000157637
Solute carrier family 38 member 10
Low tissue specificity
Detected in all
SLC5A10
ENSSSCG00000018049
ENSG00000154025
Sodium/glucose cotransporter 5
Low tissue specificity
Detected in all
SLC9A8
ENSSSCG00000007466
ENSG00000197818
Solute carrier family 9 member A8
Low tissue specificity
Detected in all
SLF2
ENSSSCG00000037592
ENSG00000119906
SMC5-SMC6 complex localization factor 2
Low tissue specificity
Detected in all
SLFNL1
ENSSSCG00000003972
ENSG00000171790
Schlafen like 1
Tissue enhanced
Detected in many
testis:
42.8
SLTM
ENSSSCG00000004592
ENSG00000137776
SAFB like transcription modulator
Low tissue specificity
Detected in all
SLX4IP
ENSSSCG00000007066
ENSG00000149346
SLX4 interacting protein
Low tissue specificity
Detected in all
SMAD2
ENSSSCG00000004505
ENSG00000175387
Mothers against decapentaplegic homolog 2
Low tissue specificity
Detected in all
SMARCA4
ENSSSCG00000013629
ENSG00000127616
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Low tissue specificity
Detected in all
SMARCAL1
ENSSSCG00000035501
ENSG00000138375
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
Low tissue specificity
Detected in all
SMARCE1
ENSSSCG00000039137
ENSG00000073584
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Low tissue specificity
Detected in all
SMC1A
ENSSSCG00000012325
ENSG00000072501
Structural maintenance of chromosomes 1A
Tissue enhanced
Detected in all
liver:
76.5
SMC3
ENSSSCG00000010625
ENSG00000108055
Structural maintenance of chromosomes 3
Low tissue specificity
Detected in all
SMC5
ENSSSCG00000005255
ENSG00000198887
Structural maintenance of chromosomes 5
Low tissue specificity
Detected in all
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