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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RBMX
ENSSSCG00000012703
ENSG00000147274
RNA-binding motif protein, X chromosome
Low tissue specificity
Detected in all
RBMX2
ENSSSCG00000032739
ENSG00000134597
RNA-binding motif protein, X-linked 2
Low tissue specificity
Detected in all
RC3H1
ENSSSCG00000015498
ENSG00000135870
Ring finger and CCCH-type domains 1
Low tissue specificity
Detected in all
RCOR1
ENSSSCG00000002526
ENSG00000089902
REST corepressor 1
Low tissue specificity
Detected in all
RCOR3
ENSSSCG00000028293
ENSG00000117625
REST corepressor 3
Low tissue specificity
Detected in all
RECQL
ENSSSCG00000000580
ENSG00000004700
ATP-dependent DNA helicase Q1
Low tissue specificity
Detected in all
RECQL5
ENSSSCG00000023978
ENSG00000108469
RecQ like helicase 5
Low tissue specificity
Detected in all
RENBP
ENSSSCG00000012792
ENSG00000102032
N-acylglucosamine 2-epimerase
Tissue enhanced
Detected in all
kidney:
50.4
REPIN1
ENSSSCG00000033708
ENSG00000214022
Replication initiator 1
Low tissue specificity
Detected in all
RERE
ENSSSCG00000033497
ENSG00000142599
Arginine-glutamic acid dipeptide repeats
Low tissue specificity
Detected in all
REST
ENSSSCG00000023357
ENSG00000084093
RE1 silencing transcription factor
Low tissue specificity
Detected in all
REV3L
ENSSSCG00000025703
ENSG00000009413
REV3 like, DNA directed polymerase zeta catalytic subunit
Low tissue specificity
Detected in all
REXO1
ENSSSCG00000040624
ENSG00000079313
RNA exonuclease 1 homolog
Low tissue specificity
Detected in all
RFC1
ENSSSCG00000008788
ENSG00000035928
Replication factor C subunit 1
Low tissue specificity
Detected in all
RFX1
ENSSSCG00000013764
ENSG00000132005
Regulatory factor X1
Low tissue specificity
Detected in all
RFX7
ENSSSCG00000004603
ENSG00000181827
Regulatory factor X7
Low tissue specificity
Detected in all
RGL2
ENSSSCG00000001506
ENSG00000237441
Ral guanine nucleotide dissociation stimulator-like 2
Low tissue specificity
Detected in all
RHOT2
ENSSSCG00000007997
ENSG00000140983
Mitochondrial Rho GTPase 2
Low tissue specificity
Detected in all
RIC1
ENSSSCG00000005208
ENSG00000107036
RIC1 homolog, RAB6A GEF complex partner 1
Low tissue specificity
Detected in all
RIN1
ENSSSCG00000012950
ENSG00000174791
Ras and Rab interactor 1
Tissue enhanced
Detected in many
cornea:
20.6
skin:
27.3
RING1
ENSSSCG00000001477
ENSG00000204227
E3 ubiquitin-protein ligase RING1
Low tissue specificity
Detected in all
RINL
ENSSSCG00000022692
ENSG00000187994
Ras and Rab interactor like
Tissue enhanced
Detected in many
lymphoid tissue:
26.8
vagus nerve:
26.5
RIOK1
ENSSSCG00000001024
ENSG00000124784
Serine/threonine-protein kinase RIO1
Low tissue specificity
Detected in all
RIOX1
ENSSSCG00000002344
ENSG00000170468
Ribosomal oxygenase 1
Low tissue specificity
Detected in all
RIPK1
ENSSSCG00000001009
ENSG00000137275
Receptor interacting serine/threonine kinase 1
Low tissue specificity
Detected in all
RMI1
ENSSSCG00000039950
ENSG00000178966
RecQ mediated genome instability 1
Low tissue specificity
Detected in all
RMND5B
ENSSSCG00000014033
ENSG00000145916
Protein RMD5 homolog B
Low tissue specificity
Detected in all
RNF111
ENSSSCG00000004589
ENSG00000157450
Ring finger protein 111
Low tissue specificity
Detected in all
RNF121
ENSSSCG00000014800
ENSG00000137522
Ring finger protein 121
Low tissue specificity
Detected in all
RNF123
ENSSSCG00000011387
ENSG00000164068
Ring finger protein 123
Low tissue specificity
Detected in all
RNF135
ENSSSCG00000017737
ENSG00000181481
Ring finger protein 135
Low tissue specificity
Detected in all
RNF149
ENSSSCG00000008168
ENSG00000163162
Ring finger protein 149
Low tissue specificity
Detected in all
RNF169
ENSSSCG00000021822
ENSG00000166439
Ring finger protein 169
Low tissue specificity
Detected in all
RNF20
ENSSSCG00000005399
ENSG00000155827
Ring finger protein 20
Low tissue specificity
Detected in all
RNF214
ENSSSCG00000015077
ENSG00000167257
Ring finger protein 214
Low tissue specificity
Detected in all
RNF216
ENSSSCG00000021285
ENSG00000011275
Ring finger protein 216
Low tissue specificity
Detected in all
RNF222
ENSSSCG00000017985
ENSG00000189051
Ring finger protein 222
Low tissue specificity
Detected in all
RNF227
ENSSSCG00000023166
ENSG00000179859
Ring finger protein 227
Low tissue specificity
Detected in all
RNF4
ENSSSCG00000008690
ENSG00000063978
E3 ubiquitin-protein ligase RNF4
Low tissue specificity
Detected in all
RNF40
ENSSSCG00000007786
ENSG00000103549
Ring finger protein 40
Low tissue specificity
Detected in all
RNF44
ENSSSCG00000014056
ENSG00000146083
Ring finger protein 44
Low tissue specificity
Detected in all
RNGTT
ENSSSCG00000004311
ENSG00000111880
RNA guanylyltransferase and 5'-phosphatase
Low tissue specificity
Detected in all
RNPC3
ENSSSCG00000037254
ENSG00000185946
RNA binding region (RNP1, RRM) containing 3
Low tissue specificity
Detected in all
ROCK1
ENSSSCG00000021893
ENSG00000067900
Rho associated coiled-coil containing protein kinase 1
Low tissue specificity
Detected in all
ROCK2
ENSSSCG00000008629
ENSG00000134318
Rho-associated protein kinase 2
Low tissue specificity
Detected in all
RP9
ENSSSCG00000038919
ENSG00000164610
RP9, pre-mRNA splicing factor
Low tissue specificity
Detected in all
RPAIN
ENSSSCG00000036311
ENSG00000129197
RPA interacting protein
Low tissue specificity
Detected in all
RPAP1
ENSSSCG00000004745
ENSG00000103932
RNA polymerase II associated protein 1
Low tissue specificity
Detected in all
RPAP2
ENSSSCG00000006903
ENSG00000122484
RNA polymerase II associated protein 2
Low tissue specificity
Detected in all
RPF1
ENSSSCG00000022145
ENSG00000117133
Ribosome production factor 1 homolog
Low tissue specificity
Detected in all
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