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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
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Subclass
Class
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PTK6
ENSSSCG00000031474
ENSG00000101213
Protein tyrosine kinase 6
Low tissue specificity
Detected in many
PTPN18
ENSSSCG00000015735
ENSG00000072135
Protein tyrosine phosphatase, non-receptor type 18
Tissue enhanced
Detected in many
male glands:
60.7
PTPN23
ENSSSCG00000032957
ENSG00000076201
Protein tyrosine phosphatase, non-receptor type 23
Low tissue specificity
Detected in all
PTX4
ENSSSCG00000037262
ENSG00000251692
Pentraxin 4
Tissue enhanced
Detected in all
epididymis:
51.3
male glands:
34.0
PUM1
ENSSSCG00000003591
ENSG00000134644
Pumilio RNA binding family member 1
Low tissue specificity
Detected in all
PUM2
ENSSSCG00000008600
ENSG00000055917
Pumilio RNA binding family member 2
Low tissue specificity
Detected in all
PUM3
ENSSSCG00000005227
ENSG00000080608
Pumilio RNA binding family member 3
Low tissue specificity
Detected in all
PUS1
ENSSSCG00000009741
ENSG00000177192
Pseudouridylate synthase 1
Low tissue specificity
Detected in all
PUSL1
ENSSSCG00000003338
ENSG00000169972
Pseudouridylate synthase-like 1
Low tissue specificity
Detected in all
PYROXD2
ENSSSCG00000010533
ENSG00000119943
Pyridine nucleotide-disulphide oxidoreductase domain 2
Tissue enhanced
Detected in many
kidney:
41.0
QRICH1
ENSSSCG00000011373
ENSG00000198218
Glutamine rich 1
Low tissue specificity
Detected in all
QSOX2
ENSSSCG00000040163
ENSG00000165661
Quiescin sulfhydryl oxidase 2
Low tissue specificity
Detected in all
QTRT2
ENSSSCG00000011912
ENSG00000151576
Queuine tRNA-ribosyltransferase accessory subunit 2
Low tissue specificity
Detected in all
R3HCC1L
ENSSSCG00000010531
ENSG00000166024
R3H domain and coiled-coil containing 1 like
Low tissue specificity
Detected in all
RAB24
ENSSSCG00000014043
ENSG00000169228
Ras-related protein Rab-24
Low tissue specificity
Detected in all
RAB43
ENSSSCG00000037568
ENSG00000172780
RAB43, member RAS oncogene family
Tissue enhanced
Detected in all
stomach:
48.4
RABEP2
ENSSSCG00000007806
ENSG00000177548
Rabaptin, RAB GTPase binding effector protein 2
Low tissue specificity
Detected in all
RABL6
ENSSSCG00000005841
ENSG00000196642
RAB, member RAS oncogene family like 6
Low tissue specificity
Detected in all
RAD1
ENSSSCG00000016826
ENSG00000113456
RAD1 checkpoint DNA exonuclease
Low tissue specificity
Detected in all
RAD51B
ENSSSCG00000028877
ENSG00000182185
RAD51 paralog B
Low tissue specificity
Detected in all
RAD52
ENSSSCG00000000754
ENSG00000002016
DNA repair protein RAD52 homolog
Low tissue specificity
Detected in all
RAD54L2
ENSSSCG00000011425
ENSG00000164080
RAD54 like 2
Low tissue specificity
Detected in all
RAD9A
ENSSSCG00000012914
ENSG00000172613
RAD9 checkpoint clamp component A
Low tissue specificity
Detected in all
RAE1
ENSSSCG00000007503
ENSG00000101146
MRNA export factor
Low tissue specificity
Detected in all
RAI1
ENSSSCG00000038164
ENSG00000108557
Retinoic acid induced 1
Low tissue specificity
Detected in all
RALBP1
ENSSSCG00000003680
ENSG00000017797
RalA binding protein 1
Low tissue specificity
Detected in all
RALGAPA2
ENSSSCG00000026506
ENSG00000188559
Ral GTPase activating protein catalytic alpha subunit 2
Low tissue specificity
Detected in all
RANBP3
ENSSSCG00000013533
ENSG00000031823
RAN binding protein 3
Low tissue specificity
Detected in all
RAPGEF1
ENSSSCG00000005719
ENSG00000107263
Rap guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
RARS2
ENSSSCG00000004303
ENSG00000146282
Arginyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
RAVER1
ENSSSCG00000013650
ENSG00000161847
Ribonucleoprotein, PTB binding 1
Low tissue specificity
Detected in all
RB1CC1
ENSSSCG00000028902
ENSG00000023287
RB1 inducible coiled-coil 1
Low tissue specificity
Detected in all
RBAK
ENSSSCG00000008668
ENSG00000146587
RB associated KRAB zinc finger
Low tissue specificity
Detected in all
RBBP6
ENSSSCG00000007830
ENSG00000122257
RB binding protein 6, ubiquitin ligase
Low tissue specificity
Detected in all
RBCK1
ENSSSCG00000007206
ENSG00000125826
RANBP2-type and C3HC4-type zinc finger containing 1
Low tissue specificity
Detected in all
RBM10
ENSSSCG00000012271
ENSG00000182872
RNA binding motif protein 10
Low tissue specificity
Detected in all
RBM12B
ENSSSCG00000006110
ENSG00000183808
RNA binding motif protein 12B
Low tissue specificity
Detected in all
RBM14
ENSSSCG00000038008
ENSG00000239306
RNA-binding protein 14
Low tissue specificity
Detected in all
RBM15
ENSSSCG00000006809
ENSG00000162775
RNA binding motif protein 15
Low tissue specificity
Detected in all
RBM15B
ENSSSCG00000011420
ENSG00000259956
RNA binding motif protein 15B
Low tissue specificity
Detected in all
RBM19
ENSSSCG00000009868
ENSG00000122965
RNA binding motif protein 19
Low tissue specificity
Detected in all
RBM23
ENSSSCG00000026700
ENSG00000100461
RNA binding motif protein 23
Low tissue specificity
Detected in all
RBM26
ENSSSCG00000009479
ENSG00000139746
RNA binding motif protein 26
Low tissue specificity
Detected in all
RBM28
ENSSSCG00000031847
ENSG00000106344
RNA binding motif protein 28
Low tissue specificity
Detected in all
RBM33
ENSSSCG00000016417
ENSG00000184863
RNA binding motif protein 33
Low tissue specificity
Detected in all
RBM39
ENSSSCG00000007309
ENSG00000131051
RNA binding motif protein 39
Low tissue specificity
Detected in all
RBM4
ENSSSCG00000032437
ENSG00000173933
RNA-binding protein 4
Low tissue specificity
Detected in all
RBM41
ENSSSCG00000012556
ENSG00000089682
RNA binding motif protein 41
Low tissue specificity
Detected in all
RBM45
ENSSSCG00000015996
ENSG00000155636
RNA binding motif protein 45
Low tissue specificity
Detected in all
RBM5
ENSSSCG00000011395
ENSG00000003756
RNA binding motif protein 5
Low tissue specificity
Detected in all
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