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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PPFIA1
ENSSSCG00000037451
ENSG00000131626
PTPRF interacting protein alpha 1
Low tissue specificity
Detected in all
PPIH
ENSSSCG00000003964
ENSG00000171960
Peptidylprolyl isomerase H
Low tissue specificity
Detected in all
PPIL2
ENSSSCG00000010083
ENSG00000100023
Peptidylprolyl isomerase like 2
Low tissue specificity
Detected in all
PPM1D
ENSSSCG00000026665
ENSG00000170836
Protein phosphatase, Mg2+/Mn2+ dependent 1D
Tissue enhanced
Detected in all
testis:
46.8
PPM1G
ENSSSCG00000027135
ENSG00000115241
Protein phosphatase, Mg2+/Mn2+ dependent 1G
Tissue enhanced
Detected in all
testis:
73.6
PPOX
ENSSSCG00000006361
ENSG00000143224
Protoporphyrinogen oxidase
Low tissue specificity
Detected in all
PPP1R10
ENSSSCG00000001347
ENSG00000204569
Serine/threonine-protein phosphatase 1 regulatory subunit 10
Low tissue specificity
Detected in all
PPP1R12C
ENSSSCG00000027189
ENSG00000125503
Protein phosphatase 1 regulatory subunit 12C
Low tissue specificity
Detected in all
PPP1R13B
ENSSSCG00000002544
ENSG00000088808
Protein phosphatase 1 regulatory subunit 13B
Low tissue specificity
Detected in all
PPP1R37
ENSSSCG00000037056
ENSG00000104866
Protein phosphatase 1 regulatory subunit 37
Low tissue specificity
Detected in all
PPP2R3B
ENSSSCG00000032029
ENSG00000167393
Protein phosphatase 2 regulatory subunit B''beta
Low tissue specificity
Detected in many
PPP4R3A
ENSSSCG00000002441
ENSG00000100796
Protein phosphatase 4 regulatory subunit 3A
Low tissue specificity
Detected in all
PPP4R3B
ENSSSCG00000008398
ENSG00000275052
Serine/threonine-protein phosphatase 4 regulatory subunit 3B
Low tissue specificity
Detected in all
PPP6R1
ENSSSCG00000003301
ENSG00000105063
Protein phosphatase 6 regulatory subunit 1
Low tissue specificity
Detected in all
PPP6R2
ENSSSCG00000000970
ENSG00000100239
Serine/threonine-protein phosphatase 6 regulatory subunit 2
Low tissue specificity
Detected in all
PPP6R3
ENSSSCG00000012884
ENSG00000110075
Protein phosphatase 6 regulatory subunit 3
Low tissue specificity
Detected in all
PQLC2
ENSSSCG00000003492
ENSG00000040487
Lysosomal amino acid transporter 1 homolog
Tissue enhanced
Detected in all
epididymis:
58.8
PRAM1
ENSSSCG00000024810
ENSG00000133246
PML-RARA regulated adaptor molecule 1
Tissue enhanced
Detected in all
epididymis:
60.0
lymphoid tissue:
72.8
PRDM10
ENSSSCG00000015243
ENSG00000170325
PR/SET domain 10
Tissue enhanced
Detected in all
liver:
44.9
PRDM11
ENSSSCG00000013276
ENSG00000019485
PR/SET domain 11
Low tissue specificity
Detected in all
PRDM15
ENSSSCG00000012084
ENSG00000141956
PR/SET domain 15
Low tissue specificity
Detected in all
PRDM16
ENSSSCG00000021490
ENSG00000142611
PR/SET domain 16
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
PRDM2
ENSSSCG00000020710
ENSG00000116731
PR/SET domain 2
Low tissue specificity
Detected in all
PRDM4
ENSSSCG00000000160
ENSG00000110851
PR/SET domain 4
Low tissue specificity
Detected in all
PRELID1
ENSSSCG00000031182
ENSG00000169230
PRELI domain-containing protein 1, mitochondrial
Low tissue specificity
Detected in all
PRKAG2
ENSSSCG00000016432
ENSG00000106617
Protein kinase AMP-activated non-catalytic subunit gamma 2
Low tissue specificity
Detected in all
PRKAR2A
ENSSSCG00000011363
ENSG00000114302
CAMP-dependent protein kinase type II-alpha regulatory subunit
Low tissue specificity
Detected in all
PRKD2
ENSSSCG00000026152
ENSG00000105287
Protein kinase D2
Low tissue specificity
Detected in all
PRKDC
ENSSSCG00000006274
ENSG00000253729
Protein kinase, DNA-activated, catalytic polypeptide
Low tissue specificity
Detected in all
PRKRIP1
ENSSSCG00000007684
ENSG00000128563
PRKR interacting protein 1
Low tissue specificity
Detected in all
PROSER1
ENSSSCG00000040697
ENSG00000120685
Proline and serine rich 1
Low tissue specificity
Detected in all
PRPF3
ENSSSCG00000030119
ENSG00000117360
U4/U6 small nuclear ribonucleoprotein Prp3
Low tissue specificity
Detected in all
PRPF38A
ENSSSCG00000028288
ENSG00000134748
Pre-mRNA processing factor 38A
Low tissue specificity
Detected in all
PRPF39
ENSSSCG00000004997
ENSG00000185246
Pre-mRNA processing factor 39
Low tissue specificity
Detected in all
PRPF40B
ENSSSCG00000000204
ENSG00000110844
Pre-mRNA processing factor 40 homolog B
Low tissue specificity
Detected in all
PRPF4B
ENSSSCG00000001002
ENSG00000112739
Pre-mRNA processing factor 4B
Low tissue specificity
Detected in all
PRPF6
ENSSSCG00000029119
ENSG00000101161
Pre-mRNA processing factor 6
Low tissue specificity
Detected in all
PRR12
ENSSSCG00000032668
ENSG00000126464
Proline rich 12
Low tissue specificity
Detected in all
PRR14
ENSSSCG00000007790
ENSG00000156858
Proline rich 14
Low tissue specificity
Detected in all
PRR14L
ENSSSCG00000010033
ENSG00000183530
Proline rich 14 like
Low tissue specificity
Detected in all
PRR19
ENSSSCG00000003024
ENSG00000188368
Proline rich 19
Low tissue specificity
Detected in all
PRR22
ENSSSCG00000036793
ENSG00000212123
Proline rich 22
Low tissue specificity
Detected in many
PRRC2A
ENSSSCG00000001409
ENSG00000204469
Protein PRRC2A
Low tissue specificity
Detected in all
PRRC2C
ENSSSCG00000015480
ENSG00000117523
Proline rich coiled-coil 2C
Low tissue specificity
Detected in all
PSKH1
ENSSSCG00000040313
ENSG00000159792
Protein serine kinase H1
Low tissue specificity
Detected in all
PSME4
ENSSSCG00000008412
ENSG00000068878
Proteasome activator subunit 4
Low tissue specificity
Detected in all
PSPC1
ENSSSCG00000009569
ENSG00000121390
Paraspeckle component 1
Low tissue specificity
Detected in all
PTBP3
ENSSSCG00000005466
ENSG00000119314
Polypyrimidine tract-binding protein 3
Low tissue specificity
Detected in all
PTCD2
ENSSSCG00000016975
ENSG00000049883
Pentatricopeptide repeat domain 2
Low tissue specificity
Detected in all
PTDSS2
ENSSSCG00000037427
ENSG00000174915
Phosphatidylserine synthase 2
Low tissue specificity
Detected in all
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