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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ANAPC2
ENSSSCG00000032828
ENSG00000176248
Anaphase promoting complex subunit 2
Low tissue specificity
Detected in all
ANGEL2
ENSSSCG00000015588
ENSG00000174606
Angel homolog 2
Low tissue specificity
Detected in all
ANKHD1
ENSSSCG00000014364
ENSG00000131503,ENSG00000254996
Ankyrin repeat and KH domain-containing protein 1
Low tissue specificity
Detected in all
ANKMY1
ENSSSCG00000016365
ENSG00000144504
Ankyrin repeat and MYND domain containing 1
Low tissue specificity
Detected in all
ANKRD10
ENSSSCG00000033732
ENSG00000088448
Ankyrin repeat domain-containing protein 10
Low tissue specificity
Detected in all
ANKRD11
ENSSSCG00000039541
ENSG00000167522
Ankyrin repeat domain 11
Tissue enhanced
Detected in all
stomach:
74.9
ANKRD12
ENSSSCG00000003682
ENSG00000101745
Ankyrin repeat domain 12
Low tissue specificity
Detected in all
ANKRD13D
ENSSSCG00000012917
ENSG00000172932
Ankyrin repeat domain 13D
Low tissue specificity
Detected in all
ANKRD16
ENSSSCG00000028790
ENSG00000134461
Ankyrin repeat domain 16
Low tissue specificity
Detected in all
ANKRD37
ENSSSCG00000015798
ENSG00000186352
Ankyrin repeat domain 37
Tissue enhanced
Detected in all
lens:
23.4
ANKRD49
ENSSSCG00000014956
ENSG00000168876
Ankyrin repeat domain 49
Low tissue specificity
Detected in all
ANKRD54
ENSSSCG00000000120
ENSG00000100124
Ankyrin repeat domain 54
Low tissue specificity
Detected in all
ANKRD9
ENSSSCG00000039713
ENSG00000156381
Ankyrin repeat domain 9
Tissue enhanced
Detected in many
liver:
24.5
testis:
55.6
ANKS1A
ENSSSCG00000001534
ENSG00000064999
Ankyrin repeat and SAM domain-containing protein 1A
Tissue enriched
Detected in all
kidney:
96.5
ANKS3
ENSSSCG00000007939
ENSG00000168096
Ankyrin repeat and sterile alpha motif domain containing 3
Low tissue specificity
Detected in all
ANO8
ENSSSCG00000039330
ENSG00000074855
Anoctamin 8
Low tissue specificity
Detected in all
ANPEP
ENSSSCG00000001849
ENSG00000166825
Aminopeptidase N
Tissue enhanced
Detected in many
male glands:
57.2
small intestine:
208.3
AP1G2
ENSSSCG00000002015
ENSG00000213983
Adaptor related protein complex 1 gamma 2 subunit
Low tissue specificity
Detected in all
AP3B1
ENSSSCG00000014101
ENSG00000132842
AP-3 complex subunit beta-1
Low tissue specificity
Detected in all
AP3M1
ENSSSCG00000010314
ENSG00000185009
AP-3 complex subunit mu-1
Low tissue specificity
Detected in all
AP4B1
ENSSSCG00000006762
ENSG00000134262
Adaptor related protein complex 4 beta 1 subunit
Low tissue specificity
Detected in all
AP4E1
ENSSSCG00000004634
ENSG00000081014
Adaptor related protein complex 4 epsilon 1 subunit
Low tissue specificity
Detected in all
AP5B1
ENSSSCG00000012978
ENSG00000254470
Adaptor related protein complex 5 beta 1 subunit
Low tissue specificity
Detected in all
AP5Z1
ENSSSCG00000007577
ENSG00000242802
AP-5 complex subunit zeta-1
Low tissue specificity
Detected in all
APCDD1L
ENSSSCG00000007515
ENSG00000198768
APC down-regulated 1 like
Tissue enhanced
Detected in many
cartilage:
12.7
dura mater:
18.2
APLF
ENSSSCG00000008346
ENSG00000169621
Aprataxin and PNKP like factor
Low tissue specificity
Detected in all
ARFIP1
ENSSSCG00000009010
ENSG00000164144
Arfaptin-1
Low tissue specificity
Detected in all
ARGLU1
ENSSSCG00000009536
ENSG00000134884
Arginine and glutamate rich 1
Low tissue specificity
Detected in all
ARHGEF11
ENSSSCG00000006461
ENSG00000132694
Rho guanine nucleotide exchange factor 11
Low tissue specificity
Detected in all
ARHGEF7
ENSSSCG00000009551
ENSG00000102606
Rho guanine nucleotide exchange factor 7
Low tissue specificity
Detected in all
ARID1A
ENSSSCG00000003559
ENSG00000117713
AT-rich interaction domain 1A
Low tissue specificity
Detected in all
ARID1B
ENSSSCG00000004064
ENSG00000049618
AT-rich interaction domain 1B
Low tissue specificity
Detected in all
ARID2
ENSSSCG00000030685
ENSG00000189079
AT-rich interaction domain 2
Low tissue specificity
Detected in all
ARID3A
ENSSSCG00000037642
ENSG00000116017
AT-rich interaction domain 3A
Tissue enhanced
Detected in all
testis:
40.3
ARID3B
ENSSSCG00000001905
ENSG00000179361
AT-rich interaction domain 3B
Low tissue specificity
Detected in all
ARID4B
ENSSSCG00000010156
ENSG00000054267
AT-rich interaction domain 4B
Low tissue specificity
Detected in all
ARIH2
ENSSSCG00000011367
ENSG00000177479
Ariadne RBR E3 ubiquitin protein ligase 2
Low tissue specificity
Detected in all
ARL16
ENSSSCG00000038161
ENSG00000214087
ADP ribosylation factor like GTPase 16
Low tissue specificity
Detected in all
ARMC7
ENSSSCG00000017214
ENSG00000125449
Armadillo repeat-containing protein 7
Low tissue specificity
Detected in all
ARMC9
ENSSSCG00000023994
ENSG00000135931
Armadillo repeat containing 9
Low tissue specificity
Detected in all
ARNTL
ENSSSCG00000013397
ENSG00000133794
Aryl hydrocarbon receptor nuclear translocator-like protein 1
Low tissue specificity
Detected in all
ARSD
ENSSSCG00000020871
ENSG00000006756
Arylsulfatase D
Low tissue specificity
Detected in all
ASAP1
ENSSSCG00000028759
ENSG00000153317
ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
Low tissue specificity
Detected in all
ASB7
ENSSSCG00000004821
ENSG00000183475
Ankyrin repeat and SOCS box containing 7
Low tissue specificity
Detected in all
ASCC3
ENSSSCG00000004358
ENSG00000112249
Activating signal cointegrator 1 complex subunit 3
Low tissue specificity
Detected in all
ASIC3
ENSSSCG00000027024
ENSG00000213199
Acid sensing ion channel subunit 3
Tissue enhanced
Detected in many
lymphoid tissue:
22.2
ASIP
ENSSSCG00000007277
ENSG00000101440
Agouti-signaling protein
Tissue enhanced
Detected in many
choroid plexus:
15.8
ASMTL
ENSSSCG00000037174
ENSG00000169093
Acetylserotonin O-methyltransferase like
Low tissue specificity
Detected in all
ASPSCR1
ENSSSCG00000040727
ENSG00000169696
ASPSCR1, UBX domain containing tether for SLC2A4
Low tissue specificity
Detected in all
ASXL1
ENSSSCG00000007248
ENSG00000171456
Additional sex combs like 1, transcriptional regulator
Low tissue specificity
Detected in all
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