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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Biological process
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NSUN2
ENSSSCG00000017104
ENSG00000037474
NOP2/Sun RNA methyltransferase family member 2
Low tissue specificity
Detected in all
NSUN4
ENSSSCG00000038280
ENSG00000117481
NOP2/Sun RNA methyltransferase family member 4
Tissue enriched
Detected in all
testis:
60.1
NSUN5
ENSSSCG00000007704
ENSG00000130305
NOP2/Sun RNA methyltransferase family member 5
Low tissue specificity
Detected in all
NT5C
ENSSSCG00000028210
ENSG00000125458
5', 3'-nucleotidase, cytosolic
Low tissue specificity
Detected in all
NT5C2
ENSSSCG00000010594
ENSG00000076685
5'-nucleotidase, cytosolic II
Low tissue specificity
Detected in all
NUBP2
ENSSSCG00000008014
ENSG00000095906
Cytosolic Fe-S cluster assembly factor NUBP2
Low tissue specificity
Detected in all
NUDT16L1
ENSSSCG00000035999
ENSG00000168101
Nudix hydrolase 16 like 1
Low tissue specificity
Detected in all
NUFIP1
ENSSSCG00000009420
ENSG00000083635
NUFIP1, FMR1 interacting protein 1
Low tissue specificity
Detected in all
NUFIP2
ENSSSCG00000017785
ENSG00000108256
NUFIP2, FMR1 interacting protein 2
Low tissue specificity
Detected in all
NUMA1
ENSSSCG00000014802
ENSG00000137497
Nuclear mitotic apparatus protein 1
Low tissue specificity
Detected in all
NUMB
ENSSSCG00000022178
ENSG00000133961
NUMB, endocytic adaptor protein
Low tissue specificity
Detected in all
NUP107
ENSSSCG00000000486
ENSG00000111581
Nucleoporin 107
Low tissue specificity
Detected in all
NUP153
ENSSSCG00000026034
ENSG00000124789
Nucleoporin 153
Low tissue specificity
Detected in all
NUP160
ENSSSCG00000013223
ENSG00000030066
Nucleoporin 160
Low tissue specificity
Detected in all
NUP188
ENSSSCG00000005667
ENSG00000095319
Nucleoporin 188
Tissue enhanced
Detected in all
testis:
68.4
NUP205
ENSSSCG00000030386
ENSG00000155561
Nucleoporin 205
Low tissue specificity
Detected in all
NUP214
ENSSSCG00000005711
ENSG00000126883
Nucleoporin 214
Low tissue specificity
Detected in all
NUP37
ENSSSCG00000000860
ENSG00000075188
Nucleoporin 37
Low tissue specificity
Detected in all
NUP50
ENSSSCG00000000019
ENSG00000093000
Nucleoporin 50
Tissue enhanced
Detected in all
testis:
64.9
NUP58
ENSSSCG00000035318
ENSG00000139496
Nucleoporin 58
Low tissue specificity
Detected in all
NUP85
ENSSSCG00000017207
ENSG00000125450
Nucleoporin 85
Low tissue specificity
Detected in all
NUP88
ENSSSCG00000033706
ENSG00000108559
Nucleoporin 88
Low tissue specificity
Detected in all
NUP98
ENSSSCG00000014794
ENSG00000110713
Nucleoporin 98
Low tissue specificity
Detected in all
NXF1
ENSSSCG00000022866
ENSG00000162231
Nuclear RNA export factor 1
Low tissue specificity
Detected in all
NXT2
ENSSSCG00000012581
ENSG00000101888
Nuclear transport factor 2 like export factor 2
Low tissue specificity
Detected in all
ODC1
ENSSSCG00000027121
ENSG00000115758
Ornithine decarboxylase
Tissue enhanced
Detected in all
endometrium:
92.9
ovary:
68.3
ODF2
ENSSSCG00000005651
ENSG00000136811
Outer dense fiber protein 2
Tissue enriched
Detected in all
testis:
133.6
OGDH
ENSSSCG00000016743
ENSG00000105953
Oxoglutarate dehydrogenase
Low tissue specificity
Detected in all
OGG1
ENSSSCG00000011549
ENSG00000114026
8-oxoguanine DNA glycosylase
Low tissue specificity
Detected in all
OGT
ENSSSCG00000012403
ENSG00000147162
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Low tissue specificity
Detected in all
OMA1
ENSSSCG00000003831
ENSG00000162600
OMA1 zinc metallopeptidase
Low tissue specificity
Detected in all
OPLAH
ENSSSCG00000005911
ENSG00000178814
5-oxoprolinase, ATP-hydrolysing
Tissue enhanced
Detected in many
male glands:
45.1
salivary gland:
29.5
OR1K1
ENSSSCG00000039297
ENSG00000165204
Olfactory receptor family 1 subfamily K member 1
Low tissue specificity
Detected in many
OSBPL7
ENSSSCG00000017518
ENSG00000006025
Oxysterol binding protein like 7
Low tissue specificity
Detected in many
OSBPL9
ENSSSCG00000021292
ENSG00000117859
Oxysterol binding protein like 9
Low tissue specificity
Detected in all
OTUD4
ENSSSCG00000009042
ENSG00000164164
OTU deubiquitinase 4
Low tissue specificity
Detected in all
OTULIN
ENSSSCG00000034714
ENSG00000154124
OTU deubiquitinase with linear linkage specificity
Low tissue specificity
Detected in all
OXNAD1
ENSSSCG00000011197
ENSG00000154814
Oxidoreductase NAD binding domain containing 1
Low tissue specificity
Detected in all
OXSR1
ENSSSCG00000011253
ENSG00000172939
Serine/threonine-protein kinase OSR1
Tissue enhanced
Detected in all
lens:
63.3
P2RY11
ENSSSCG00000024072
ENSG00000244165
P2Y purinoceptor 11
Low tissue specificity
Detected in all
PABPN1
ENSSSCG00000002023
ENSG00000258643
Polyadenylate-binding protein 2
Low tissue specificity
Detected in all
PACSIN2
ENSSSCG00000000036
ENSG00000100266
Protein kinase C and casein kinase substrate in neurons 2
Low tissue specificity
Detected in all
PAF1
ENSSSCG00000022442
ENSG00000006712
PAF1 homolog, Paf1/RNA polymerase II complex component
Low tissue specificity
Detected in all
PAK1IP1
ENSSSCG00000001041
ENSG00000111845
PAK1 interacting protein 1
Low tissue specificity
Detected in all
PALB2
ENSSSCG00000010794
ENSG00000083093
Partner and localizer of BRCA2
Low tissue specificity
Detected in all
PAN2
ENSSSCG00000000393
ENSG00000135473
PAN2 poly(A) specific ribonuclease subunit
Low tissue specificity
Detected in all
PAN3
ENSSSCG00000009319
ENSG00000152520
PAN3 poly(A) specific ribonuclease subunit
Low tissue specificity
Detected in all
PANK4
ENSSSCG00000027299
ENSG00000157881
Pantothenate kinase 4
Low tissue specificity
Detected in all
PAPD4
ENSSSCG00000014114
ENSG00000164329
Poly(A) RNA polymerase D4, non-canonical
Tissue enhanced
Detected in all
lymphoid tissue:
93.5
PAPD5
ENSSSCG00000040887
ENSG00000121274
Poly(A) RNA polymerase D5, non-canonical
Low tissue specificity
Detected in all
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