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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NCOA6
ENSSSCG00000007284
ENSG00000198646
Nuclear receptor coactivator 6
Low tissue specificity
Detected in all
NCOR1
ENSSSCG00000018039
ENSG00000141027
Nuclear receptor corepressor 1
Low tissue specificity
Detected in all
NCOR2
ENSSSCG00000009761
ENSG00000196498
Nuclear receptor corepressor 2
Tissue enhanced
Detected in all
cartilage:
116.3
NDST1
ENSSSCG00000032731
ENSG00000070614
N-deacetylase and N-sulfotransferase 1
Low tissue specificity
Detected in all
NEIL1
ENSSSCG00000001882
ENSG00000140398
Nei like DNA glycosylase 1
Tissue enhanced
Detected in all
kidney:
36.0
liver:
51.3
NEK6
ENSSSCG00000005587
ENSG00000119408
Serine/threonine-protein kinase Nek6
Low tissue specificity
Detected in all
NEK8
ENSSSCG00000017766
ENSG00000160602
NIMA related kinase 8
Low tissue specificity
Detected in all
NELFA
ENSSSCG00000008681
ENSG00000185049
Negative elongation factor complex member A
Low tissue specificity
Detected in all
NELFB
ENSSSCG00000005846
ENSG00000188986
Negative elongation factor B
Low tissue specificity
Detected in all
NEPRO
ENSSSCG00000011923
ENSG00000163608
Nucleolus and neural progenitor protein
Low tissue specificity
Detected in all
NFAT5
ENSSSCG00000002755
ENSG00000102908
Nuclear factor of activated T cells 5
Low tissue specificity
Detected in all
NFATC3
ENSSSCG00000029578
ENSG00000072736
Nuclear factor of activated T cells 3
Tissue enhanced
Detected in all
lymphoid tissue:
106.9
NFKBID
ENSSSCG00000002917
ENSG00000167604
NFKB inhibitor delta
Low tissue specificity
Detected in all
NFRKB
ENSSSCG00000015242
ENSG00000170322
Nuclear factor related to kappaB binding protein
Low tissue specificity
Detected in all
NFX1
ENSSSCG00000010994
ENSG00000086102
Nuclear transcription factor, X-box binding 1
Low tissue specificity
Detected in all
NGLY1
ENSSSCG00000011214
ENSG00000151092
N-glycanase 1
Low tissue specificity
Detected in all
NHEJ1
ENSSSCG00000016205
ENSG00000187736
Non-homologous end joining factor 1
Low tissue specificity
Detected in all
NIPBL
ENSSSCG00000016842
ENSG00000164190
NIPBL, cohesin loading factor
Low tissue specificity
Detected in all
NIPSNAP2
ENSSSCG00000036659
ENSG00000146729
Nipsnap homolog 2
Tissue enhanced
Detected in all
skeletal muscle:
93.6
NKPD1
ENSSSCG00000035833
ENSG00000179846
NTPase KAP family P-loop domain containing 1
Tissue enhanced
Detected in many
salivary gland:
11.3
skin:
19.8
NKTR
ENSSSCG00000011284
ENSG00000114857
Natural killer cell triggering receptor
Low tissue specificity
Detected in all
NLE1
ENSSSCG00000025796
ENSG00000073536
Notchless homolog 1
Tissue enhanced
Detected in all
testis:
33.3
NMNAT3
ENSSSCG00000031142
ENSG00000163864
Nicotinamide nucleotide adenylyltransferase 3
Tissue enriched
Detected in many
lens:
75.5
NOA1
ENSSSCG00000025792
ENSG00000084092
Nitric oxide associated 1
Low tissue specificity
Detected in all
NOC2L
ENSSSCG00000023973
ENSG00000188976
NOC2 like nucleolar associated transcriptional repressor
Low tissue specificity
Detected in all
NOL10
ENSSSCG00000008635
ENSG00000115761
Nucleolar protein 10
Low tissue specificity
Detected in all
NOL6
ENSSSCG00000010990
ENSG00000165271
Nucleolar protein 6
Low tissue specificity
Detected in all
NOL7
ENSSSCG00000040816
ENSG00000225921
Nucleolar protein 7
Low tissue specificity
Detected in all
NOL9
ENSSSCG00000030253
ENSG00000162408
Nucleolar protein 9
Low tissue specificity
Detected in all
NOM1
ENSSSCG00000016411
ENSG00000146909
Nucleolar protein with MIF4G domain 1
Low tissue specificity
Detected in all
NONO
ENSSSCG00000023245
ENSG00000147140
Non-POU domain containing octamer binding
Low tissue specificity
Detected in all
NOP14
ENSSSCG00000008693
ENSG00000087269
NOP14 nucleolar protein
Low tissue specificity
Detected in all
NOP2
ENSSSCG00000000696
ENSG00000111641
Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase
Tissue enhanced
Detected in all
epididymis:
67.1
NOXRED1
ENSSSCG00000030069
ENSG00000165555
NADP dependent oxidoreductase domain containing 1
Tissue enhanced
Detected in many
testis:
15.9
NPFF
ENSSSCG00000000277
ENSG00000139574
Neuropeptide FF-amide peptide precursor
Tissue enhanced
Detected in all
brain:
56.3
NPHP4
ENSSSCG00000029843
ENSG00000131697
Nephrocystin 4
Low tissue specificity
Detected in all
NPM1
ENSSSCG00000016998
ENSG00000181163
Nucleophosmin 1
Low tissue specificity
Detected in all
NPSR1
ENSSSCG00000016664
ENSG00000187258
Neuropeptide S receptor 1
Low tissue specificity
Detected in many
NR2C1
ENSSSCG00000000902
ENSG00000120798
Nuclear receptor subfamily 2 group C member 1
Low tissue specificity
Detected in all
NR2F6
ENSSSCG00000013873
ENSG00000160113
Nuclear receptor subfamily 2 group F member 6
Tissue enhanced
Detected in all
stomach:
103.6
NRAS
ENSSSCG00000032477
GTPase NRas
Low tissue specificity
Detected in all
NRDE2
ENSSSCG00000002434
ENSG00000119720
NRDE-2, necessary for RNA interference, domain containing
Low tissue specificity
Detected in all
NRF1
ENSSSCG00000016566
ENSG00000106459
Nuclear respiratory factor 1
Low tissue specificity
Detected in all
NSD1
ENSSSCG00000014044
ENSG00000165671
Nuclear receptor binding SET domain protein 1
Low tissue specificity
Detected in all
NSD2
ENSSSCG00000008682
ENSG00000109685
Nuclear receptor binding SET domain protein 2
Low tissue specificity
Detected in all
NSD3
ENSSSCG00000015820
ENSG00000147548
Nuclear receptor binding SET domain protein 3
Low tissue specificity
Detected in all
NSL1
ENSSSCG00000015593
ENSG00000117697
NSL1, MIS12 kinetochore complex component
Low tissue specificity
Detected in all
NSMAF
ENSSSCG00000006236
ENSG00000035681
Neutral sphingomyelinase activation associated factor
Low tissue specificity
Detected in all
NSMCE4A
ENSSSCG00000010700
ENSG00000107672
NSE4 homolog A, SMC5-SMC6 complex component
Low tissue specificity
Detected in all
NSRP1
ENSSSCG00000017795
ENSG00000126653
Nuclear speckle splicing regulatory protein 1
Low tissue specificity
Detected in all
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