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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PAPD7
ENSSSCG00000017102
ENSG00000112941
Poly(A) RNA polymerase D7, non-canonical
Low tissue specificity
Detected in all
PAPLN
ENSSSCG00000002341
ENSG00000100767
Papilin, proteoglycan like sulfated glycoprotein
Tissue enriched
Detected in many
kidney:
72.8
PARN
ENSSSCG00000007878
ENSG00000140694
Poly(A)-specific ribonuclease
Low tissue specificity
Detected in all
PARP6
ENSSSCG00000001929
ENSG00000137817
Poly(ADP-ribose) polymerase family member 6
Low tissue specificity
Detected in all
PATL1
ENSSSCG00000013124
ENSG00000166889
PAT1 homolog 1, processing body mRNA decay factor
Low tissue specificity
Detected in all
PAXBP1
ENSSSCG00000012037
ENSG00000159086
PAX3 and PAX7 binding protein 1
Low tissue specificity
Detected in all
PAXIP1
ENSSSCG00000025221
ENSG00000157212
PAX interacting protein 1
Low tissue specificity
Detected in all
PBRM1
ENSSSCG00000035824
ENSG00000163939
Polybromo 1
Low tissue specificity
Detected in all
PBX2
ENSSSCG00000001438
ENSG00000204304
Pre-B-cell leukemia transcription factor 2
Low tissue specificity
Detected in all
PCDHGA8
ENSSSCG00000021326
ENSG00000253767
Protocadherin gamma subfamily A, 8
Low tissue specificity
Detected in all
PCDHGA9
ENSSSCG00000032137
ENSG00000261934
Protocadherin gamma subfamily A, 9
Low tissue specificity
Detected in all
PCDHGB5
ENSSSCG00000023485
ENSG00000276547
Protocadherin gamma subfamily B, 5
Low tissue specificity
Detected in all
PCDHGB6
ENSSSCG00000031533
ENSG00000253305
Protocadherin gamma subfamily B, 6
Low tissue specificity
Detected in all
PCDHGB7
ENSSSCG00000023932
ENSG00000254122
Protocadherin gamma subfamily B, 7
Low tissue specificity
Detected in all
PCF11
ENSSSCG00000014901
ENSG00000165494
PCF11 cleavage and polyadenylation factor subunit
Low tissue specificity
Detected in all
PCGF3
ENSSSCG00000029983
ENSG00000185619
Polycomb group ring finger 3
Low tissue specificity
Detected in all
PCIF1
ENSSSCG00000007433
ENSG00000100982
PDX1 C-terminal inhibiting factor 1
Low tissue specificity
Detected in all
PCNX3
ENSSSCG00000012983
ENSG00000197136
Pecanex homolog 3
Low tissue specificity
Detected in all
PCSK7
ENSSSCG00000015072
ENSG00000160613
Proprotein convertase subtilisin/kexin type 7
Tissue enhanced
Detected in all
stomach:
47.6
PCYOX1L
ENSSSCG00000014433
ENSG00000145882
Prenylcysteine oxidase 1 like
Tissue enhanced
Detected in all
epididymis:
80.0
lens:
111.7
PCYT2
ENSSSCG00000039650
ENSG00000185813
Phosphate cytidylyltransferase 2, ethanolamine
Low tissue specificity
Detected in all
PDCD11
ENSSSCG00000010599
ENSG00000148843
Programmed cell death 11
Low tissue specificity
Detected in all
PDCD7
ENSSSCG00000004926
ENSG00000090470
Programmed cell death 7
Low tissue specificity
Detected in all
PDE9A
ENSSSCG00000030016
ENSG00000160191
Phosphodiesterase 9A
Low tissue specificity
Detected in all
PDPR
ENSSSCG00000002724
ENSG00000090857
Pyruvate dehydrogenase phosphatase regulatory subunit
Low tissue specificity
Detected in all
PDS5A
ENSSSCG00000023112
ENSG00000121892
PDS5 cohesin associated factor A
Low tissue specificity
Detected in all
PELP1
ENSSSCG00000017924
ENSG00000141456
Proline, glutamate and leucine rich protein 1
Low tissue specificity
Detected in all
PES1
ENSSSCG00000010010
ENSG00000100029
Pescadillo homolog
Low tissue specificity
Detected in all
PEX1
ENSSSCG00000029967
ENSG00000127980
Peroxisomal biogenesis factor 1
Low tissue specificity
Detected in all
PEX10
ENSSSCG00000027916
ENSG00000157911
Peroxisomal biogenesis factor 10
Low tissue specificity
Detected in all
PFAS
ENSSSCG00000023861
ENSG00000178921
Phosphoribosylformylglycinamidine synthase
Low tissue specificity
Detected in all
PFKFB4
ENSSSCG00000011353
ENSG00000114268
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
Low tissue specificity
Detected in all
PGAM5
ENSSSCG00000035618
ENSG00000247077
PGAM family member 5, mitochondrial serine/threonine protein phosphatase
Low tissue specificity
Detected in all
PGGHG
ENSSSCG00000025023
ENSG00000142102
Protein-glucosylgalactosylhydroxylysine glucosidase
Low tissue specificity
Detected in many
PGM2
ENSSSCG00000008773
ENSG00000169299
Phosphoglucomutase 2
Low tissue specificity
Detected in all
PGPEP1
ENSSSCG00000039684
ENSG00000130517
Pyroglutamyl-peptidase I
Low tissue specificity
Detected in all
PHACTR4
ENSSSCG00000028973
ENSG00000204138
Phosphatase and actin regulator 4
Low tissue specificity
Detected in all
PHC3
ENSSSCG00000030467
ENSG00000173889
Polyhomeotic homolog 3
Low tissue specificity
Detected in all
PHF10
ENSSSCG00000030155
ENSG00000130024
PHD finger protein 10
Low tissue specificity
Detected in all
PHF12
ENSSSCG00000017779
ENSG00000109118
PHD finger protein 12
Low tissue specificity
Detected in all
PHF20
ENSSSCG00000007311
ENSG00000025293
PHD finger protein 20
Low tissue specificity
Detected in all
PHF20L1
ENSSSCG00000005950
ENSG00000129292
PHD finger protein 20 like 1
Low tissue specificity
Detected in all
PHF3
ENSSSCG00000035259
ENSG00000118482
PHD finger protein 3
Low tissue specificity
Detected in all
PHF5A
ENSSSCG00000035082
ENSG00000100410
PHD finger protein 5A
Low tissue specificity
Detected in all
PHF8
ENSSSCG00000012329
ENSG00000172943
PHD finger protein 8
Low tissue specificity
Detected in all
PHIP
ENSSSCG00000004473
ENSG00000146247
Pleckstrin homology domain interacting protein
Low tissue specificity
Detected in all
PHLDB3
ENSSSCG00000003063
ENSG00000176531
Pleckstrin homology like domain family B member 3
Tissue enhanced
Detected in many
male glands:
38.3
PHOX2A
ENSSSCG00000014813
ENSG00000165462
Paired like homeobox 2a
Tissue enriched
Detected in some
adrenal gland:
56.4
PHPT1
ENSSSCG00000032970
ENSG00000054148
14 kDa phosphohistidine phosphatase
Low tissue specificity
Detected in all
PHRF1
ENSSSCG00000029723
ENSG00000070047
PHD and ring finger domains 1
Low tissue specificity
Detected in all
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