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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MAP2K5
ENSSSCG00000004955
ENSG00000137764
Mitogen-activated protein kinase kinase 5
Low tissue specificity
Detected in all
MAP2K6
ENSSSCG00000017254
ENSG00000108984
Mitogen-activated protein kinase kinase 6
Tissue enhanced
Detected in all
liver:
36.4
MAP3K14
ENSSSCG00000017330
ENSG00000006062
Mitogen-activated protein kinase kinase kinase 14
Low tissue specificity
Detected in all
MAP3K4
ENSSSCG00000004037
ENSG00000085511
Mitogen-activated protein kinase kinase kinase 4
Low tissue specificity
Detected in all
MAPKAP1
ENSSSCG00000029169
ENSG00000119487
Mitogen-activated protein kinase associated protein 1
Tissue enhanced
Detected in all
lens:
84.4
MARCH7
ENSSSCG00000015883
ENSG00000136536
Membrane associated ring-CH-type finger 7
Low tissue specificity
Detected in all
MARK2
ENSSSCG00000013050
ENSG00000072518
Microtubule affinity regulating kinase 2
Low tissue specificity
Detected in all
MARK3
ENSSSCG00000021669
ENSG00000075413
Microtubule affinity regulating kinase 3
Low tissue specificity
Detected in all
MAU2
ENSSSCG00000021664
ENSG00000129933
MAU2 sister chromatid cohesion factor
Low tissue specificity
Detected in all
MBD1
ENSSSCG00000004516
ENSG00000141644
Methyl-CpG binding domain protein 1
Low tissue specificity
Detected in all
MBD6
ENSSSCG00000000431
ENSG00000166987
Methyl-CpG binding domain protein 6
Low tissue specificity
Detected in all
MBTD1
ENSSSCG00000017592
ENSG00000011258
Mbt domain containing 1
Low tissue specificity
Detected in all
MCM3AP
ENSSSCG00000026344
ENSG00000160294
Minichromosome maintenance complex component 3 associated protein
Low tissue specificity
Detected in all
MCM8
ENSSSCG00000007047
ENSG00000125885
Minichromosome maintenance 8 homologous recombination repair factor
Low tissue specificity
Detected in all
MCRIP2
ENSSSCG00000007995
ENSG00000172366
MAPK regulated corepressor interacting protein 2
Tissue enhanced
Detected in all
adrenal gland:
83.0
heart:
78.4
male glands:
94.2
skeletal muscle:
67.4
MCRS1
ENSSSCG00000000202
ENSG00000187778
Microspherule protein 1
Low tissue specificity
Detected in all
MCUR1
ENSSSCG00000001057
ENSG00000050393
Mitochondrial calcium uniporter regulator 1
Low tissue specificity
Detected in all
MDC1
ENSSSCG00000001362
ENSG00000137337
Mediator of DNA damage checkpoint protein 1
Low tissue specificity
Detected in all
MDM4
ENSSSCG00000015284
ENSG00000198625
MDM4, p53 regulator
Low tissue specificity
Detected in all
MDN1
ENSSSCG00000004328
ENSG00000112159
Midasin AAA ATPase 1
Low tissue specificity
Detected in all
MED1
ENSSSCG00000017505
ENSG00000125686
Mediator complex subunit 1
Low tissue specificity
Detected in all
MED12
ENSSSCG00000012396
ENSG00000184634
Mediator complex subunit 12
Low tissue specificity
Detected in all
MED13
ENSSSCG00000017672
ENSG00000108510
Mediator complex subunit 13
Low tissue specificity
Detected in all
MED13L
ENSSSCG00000009864
ENSG00000123066
Mediator complex subunit 13 like
Low tissue specificity
Detected in all
MED14
ENSSSCG00000012250
ENSG00000180182
Mediator complex subunit 14
Low tissue specificity
Detected in all
MED15
ENSSSCG00000010107
ENSG00000099917
Mediator complex subunit 15
Low tissue specificity
Detected in all
MED19
ENSSSCG00000013177
ENSG00000156603
Mediator complex subunit 19
Low tissue specificity
Detected in all
MED20
ENSSSCG00000038520
ENSG00000124641
Mediator of RNA polymerase II transcription subunit 20
Low tissue specificity
Detected in all
MED22
ENSSSCG00000031941
ENSG00000148297
Mediator complex subunit 22
Low tissue specificity
Detected in all
MED23
ENSSSCG00000004196
ENSG00000112282
Mediator complex subunit 23
Low tissue specificity
Detected in all
MED25
ENSSSCG00000003197
ENSG00000104973
Mediator complex subunit 25
Low tissue specificity
Detected in all
MEF2B
ENSSSCG00000030351
ENSG00000213999
Myocyte enhancer factor 2B
Low tissue specificity
Detected in all
MEF2D
ENSSSCG00000006482
ENSG00000116604
Myocyte enhancer factor 2D
Low tissue specificity
Detected in all
MEIOB
ENSSSCG00000025711
ENSG00000162039
Meiosis specific with OB domains
Low tissue specificity
Detected in all
MEN1
ENSSSCG00000013019
ENSG00000133895
Menin 1
Low tissue specificity
Detected in all
METAP1
ENSSSCG00000009186
ENSG00000164024
Methionyl aminopeptidase 1
Low tissue specificity
Detected in all
METTL25
ENSSSCG00000000941
ENSG00000127720
Methyltransferase like 25
Low tissue specificity
Detected in all
METTL27
ENSSSCG00000007717
ENSG00000165171
Methyltransferase like 27
Tissue enhanced
Detected in many
lens:
18.1
liver:
17.0
METTL3
ENSSSCG00000024445
ENSG00000165819
Methyltransferase like 3
Low tissue specificity
Detected in all
METTL4
ENSSSCG00000034816
ENSG00000101574
Methyltransferase like 4
Low tissue specificity
Detected in all
METTL6
ENSSSCG00000011190
ENSG00000206562
Methyltransferase-like protein 6 isoform 2
Low tissue specificity
Detected in all
MFAP1
ENSSSCG00000040383
ENSG00000140259
Microfibril associated protein 1
Low tissue specificity
Detected in all
MFAP5
ENSSSCG00000031712
ENSG00000197614
Microfibrillar-associated protein 5 precursor
Low tissue specificity
Detected in all
MFSD10
ENSSSCG00000008695
ENSG00000109736
Major facilitator superfamily domain containing 10
Low tissue specificity
Detected in all
MFSD12
ENSSSCG00000026169
ENSG00000161091
Major facilitator superfamily domain containing 12
Low tissue specificity
Detected in all
MGA
ENSSSCG00000004739
ENSG00000174197
MGA, MAX dimerization protein
Low tissue specificity
Detected in all
MGAT4A
ENSSSCG00000008188
ENSG00000071073
Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A
Low tissue specificity
Detected in all
MGAT4B
ENSSSCG00000014017
ENSG00000161013
Mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B
Tissue enhanced
Detected in all
stomach:
61.2
MIB2
ENSSSCG00000003350
ENSG00000197530
Mindbomb E3 ubiquitin protein ligase 2
Low tissue specificity
Detected in all
MICAL1
ENSSSCG00000004412
ENSG00000135596
Microtubule associated monooxygenase, calponin and LIM domain containing 1
Tissue enhanced
Detected in all
lymphoid tissue:
48.5
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