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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KMT5B
ENSSSCG00000031459
ENSG00000110066
Lysine methyltransferase 5B
Low tissue specificity
Detected in all
KMT5C
ENSSSCG00000035829
ENSG00000133247
Lysine methyltransferase 5C
Low tissue specificity
Detected in all
KTN1
ENSSSCG00000005060
ENSG00000126777
Kinectin
Low tissue specificity
Detected in all
L3MBTL3
ENSSSCG00000004203
ENSG00000198945
L3MBTL3, histone methyl-lysine binding protein
Tissue enhanced
Detected in all
cartilage:
41.4
LARP1
ENSSSCG00000017069
ENSG00000155506
La ribonucleoprotein domain family member 1
Low tissue specificity
Detected in all
LARP4B
ENSSSCG00000011162
ENSG00000107929
La ribonucleoprotein domain family member 4B
Low tissue specificity
Detected in all
LARP7
ENSSSCG00000009119
ENSG00000174720
La-related protein 7
Low tissue specificity
Detected in all
LAS1L
ENSSSCG00000012366
ENSG00000001497
LAS1 like, ribosome biogenesis factor
Low tissue specificity
Detected in all
LAT
ENSSSCG00000007811
ENSG00000213658
Linker for activation of T cells
Tissue enriched
Detected in all
lymphoid tissue:
71.9
LATS1
ENSSSCG00000004106
ENSG00000131023
Large tumor suppressor kinase 1
Low tissue specificity
Detected in all
LDB1
ENSSSCG00000010574
ENSG00000198728
LIM domain-binding protein 1
Low tissue specificity
Detected in all
LDHD
ENSSSCG00000002712
ENSG00000166816
Lactate dehydrogenase D
Tissue enhanced
Detected in many
adrenal gland:
61.0
LDLRAP1
ENSSSCG00000003549
ENSG00000157978
Low density lipoprotein receptor adaptor protein 1
Tissue enhanced
Detected in all
adrenal gland:
67.3
LEMD2
ENSSSCG00000001520
ENSG00000161904
LEM domain containing 2
Low tissue specificity
Detected in all
LEMD3
ENSSSCG00000000469
ENSG00000174106
LEM domain containing 3
Low tissue specificity
Detected in all
LENG1
ENSSSCG00000003265
ENSG00000105617
Leukocyte receptor cluster member 1
Low tissue specificity
Detected in all
LENG8
ENSSSCG00000030857
ENSG00000167615
Leukocyte receptor cluster member 8
Low tissue specificity
Detected in all
LETM1
ENSSSCG00000008675
ENSG00000168924
LETM1 and EF-hand domain-containing protein 1, mitochondrial
Low tissue specificity
Detected in all
LIG1
ENSSSCG00000003128
ENSG00000105486
DNA ligase 1
Low tissue specificity
Detected in all
LIG3
ENSSSCG00000024770
ENSG00000005156
DNA ligase 3
Low tissue specificity
Detected in all
LIG4
ENSSSCG00000009540
ENSG00000174405
DNA ligase 4
Low tissue specificity
Detected in all
LIN54
ENSSSCG00000009242
ENSG00000189308
Lin-54 DREAM MuvB core complex component
Low tissue specificity
Detected in all
LIPT1
ENSSSCG00000034715
ENSG00000144182
Lipoyltransferase 1
Low tissue specificity
Detected in all
LMAN2L
ENSSSCG00000026939
ENSG00000114988
VIP36-like protein precursor
Low tissue specificity
Detected in all
LMBR1L
ENSSSCG00000000189
ENSG00000139636
Limb development membrane protein 1 like
Low tissue specificity
Detected in all
LNX2
ENSSSCG00000009308
ENSG00000139517
Ligand of numb-protein X 2
Low tissue specificity
Detected in all
LPIN3
ENSSSCG00000007359
ENSG00000132793
Phosphatidate phosphatase LPIN3
Low tissue specificity
Detected in many
LRCH1
ENSSSCG00000009408
ENSG00000136141
Leucine rich repeats and calponin homology domain containing 1
Low tissue specificity
Detected in all
LRCH3
ENSSSCG00000011854
ENSG00000186001
Leucine rich repeats and calponin homology domain containing 3
Low tissue specificity
Detected in all
LRCH4
ENSSSCG00000007667
ENSG00000077454
Leucine rich repeats and calponin homology domain containing 4
Tissue enhanced
Detected in all
lymphoid tissue:
78.2
LRP2BP
ENSSSCG00000015792
ENSG00000109771
LRP2-binding protein
Low tissue specificity
Detected in all
LRRC14
ENSSSCG00000030451
ENSG00000160959
Leucine rich repeat containing 14
Low tissue specificity
Detected in all
LRRC24
ENSSSCG00000005896
ENSG00000254402
Leucine rich repeat containing 24
Low tissue specificity
Detected in all
LRRC45
ENSSSCG00000040503
ENSG00000169683
Leucine rich repeat containing 45
Low tissue specificity
Detected in all
LRRC74B
ENSSSCG00000010100
ENSG00000187905
Leucine rich repeat containing 74B
Low tissue specificity
Detected in all
LRWD1
ENSSSCG00000007687
ENSG00000161036
Leucine rich repeats and WD repeat domain containing 1
Low tissue specificity
Detected in all
LSM11
ENSSSCG00000038248
ENSG00000155858
LSM11, U7 small nuclear RNA associated
Low tissue specificity
Detected in all
LSM14A
ENSSSCG00000002869
ENSG00000257103
Protein LSM14 homolog A
Low tissue specificity
Detected in all
LUC7L
ENSSSCG00000007979
ENSG00000007392
LUC7 like
Low tissue specificity
Detected in all
LUC7L2
ENSSSCG00000016509
ENSG00000146963
LUC7 like 2, pre-mRNA splicing factor
Low tissue specificity
Detected in all
LY6G5C
ENSSSCG00000001416
ENSG00000204428
Lymphocyte antigen 6 family member G5C
Low tissue specificity
Detected in many
LYSMD4
ENSSSCG00000030487
ENSG00000183060
LysM domain containing 4
Low tissue specificity
Detected in all
MAB21L2
ENSSSCG00000009022
ENSG00000181541
Mab-21 like 2
Tissue enhanced
Detected in all
smooth muscle:
43.5
MACF1
ENSSSCG00000003654
ENSG00000127603
Microtubule-actin crosslinking factor 1
Low tissue specificity
Detected in all
MAD1L1
ENSSSCG00000038766
ENSG00000002822
Mitotic arrest deficient 1 like 1
Low tissue specificity
Detected in all
MAFK
ENSSSCG00000007559
ENSG00000198517
MAF bZIP transcription factor K
Low tissue specificity
Detected in all
MAK16
ENSSSCG00000036947
ENSG00000198042
Protein MAK16 homolog
Low tissue specificity
Detected in all
MAN2C1
ENSSSCG00000001881
ENSG00000140400
Mannosidase alpha class 2C member 1
Low tissue specificity
Detected in all
MAP10
ENSSSCG00000010167
ENSG00000212916
Microtubule associated protein 10
Low tissue specificity
Detected in all
MAP2K3
ENSSSCG00000034379
ENSG00000034152
Mitogen-activated protein kinase kinase 3
Low tissue specificity
Detected in all
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