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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MICALL1
ENSSSCG00000000118
ENSG00000100139
MICAL like 1
Low tissue specificity
Detected in all
MICALL2
ENSSSCG00000007557
ENSG00000164877
MICAL like 2
Tissue enhanced
Detected in many
stomach:
32.3
MIER1
ENSSSCG00000030423
ENSG00000198160
MIER1 transcriptional regulator
Tissue enhanced
Detected in all
lymphoid tissue:
75.9
MINK1
ENSSSCG00000017917
ENSG00000141503
Misshapen like kinase 1
Low tissue specificity
Detected in all
MIPOL1
ENSSSCG00000039714
ENSG00000151338
Mirror-image polydactyly 1
Low tissue specificity
Detected in all
MIS18BP1
ENSSSCG00000004999
ENSG00000129534
MIS18 binding protein 1
Low tissue specificity
Detected in all
MKL1
ENSSSCG00000000075
ENSG00000196588
Megakaryoblastic leukemia (translocation) 1
Low tissue specificity
Detected in all
MKL2
ENSSSCG00000039171
ENSG00000186260
MKL1/myocardin like 2
Low tissue specificity
Detected in all
MKNK1
ENSSSCG00000003898
ENSG00000079277
MAP kinase-interacting serine/threonine-protein kinase 1
Low tissue specificity
Detected in all
MKRN2
ENSSSCG00000029877
ENSG00000075975
Makorin ring finger protein 2
Tissue enhanced
Detected in all
lens:
57.2
MKS1
ENSSSCG00000017635
ENSG00000011143
Meckel syndrome, type 1
Low tissue specificity
Detected in all
MLLT1
ENSSSCG00000013534
ENSG00000130382
MLLT1, super elongation complex subunit
Low tissue specificity
Detected in all
MLLT10
ENSSSCG00000011085
ENSG00000078403
MLLT10, histone lysine methyltransferase DOT1L cofactor
Low tissue specificity
Detected in all
MLLT6
ENSSSCG00000032478
ENSG00000275023
MLLT6, PHD finger containing
Low tissue specificity
Detected in all
MLNR
ENSSSCG00000022064
ENSG00000102539
Motilin receptor
Low tissue specificity
Detected in many
MLXIP
ENSSSCG00000009794
ENSG00000175727
MLX interacting protein
Low tissue specificity
Detected in all
MMAA
ENSSSCG00000009039
ENSG00000151611
Methylmalonic aciduria (cobalamin deficiency) cblA type
Low tissue specificity
Detected in all
MNT
ENSSSCG00000037159
ENSG00000070444
MAX network transcriptional repressor
Low tissue specificity
Detected in all
MORC2
ENSSSCG00000010016
ENSG00000133422
MORC family CW-type zinc finger 2
Low tissue specificity
Detected in all
MPHOSPH8
ENSSSCG00000009570
ENSG00000196199
M-phase phosphoprotein 8
Low tissue specificity
Detected in all
MPHOSPH9
ENSSSCG00000009779
ENSG00000051825
M-phase phosphoprotein 9
Low tissue specificity
Detected in all
MRI1
ENSSSCG00000013756
ENSG00000037757
Methylthioribose-1-phosphate isomerase 1
Low tissue specificity
Detected in all
MRM2
ENSSSCG00000036247
ENSG00000122687
RRNA methyltransferase 2, mitochondrial
Low tissue specificity
Detected in all
MROH1
ENSSSCG00000005924
ENSG00000179832
Maestro heat like repeat family member 1
Low tissue specificity
Detected in all
MRPL16
ENSSSCG00000013118
ENSG00000166902
39S ribosomal protein L16, mitochondrial
Low tissue specificity
Detected in all
MRPL38
ENSSSCG00000017196
ENSG00000204316
Mitochondrial ribosomal protein L38
Low tissue specificity
Detected in all
MRPS7
ENSSSCG00000035134
ENSG00000125445
Mitochondrial ribosomal protein S7
Low tissue specificity
Detected in all
MRPS9
ENSSSCG00000028020
ENSG00000135972
28S ribosomal protein S9, mitochondrial
Low tissue specificity
Detected in all
MRS2
ENSSSCG00000001087
ENSG00000124532
MRS2, magnesium transporter
Low tissue specificity
Detected in all
MSANTD2
ENSSSCG00000015201
ENSG00000120458
Myb/SANT DNA binding domain containing 2
Low tissue specificity
Detected in all
MSH6
ENSSSCG00000020931
ENSG00000116062
MutS homolog 6
Low tissue specificity
Detected in all
MSL2
ENSSSCG00000011650
ENSG00000174579
MSL complex subunit 2
Low tissue specificity
Detected in all
MTDH
ENSSSCG00000006084
ENSG00000147649
Protein LYRIC
Low tissue specificity
Detected in all
MTERF4
ENSSSCG00000016380
ENSG00000122085
Mitochondrial transcription termination factor 4
Low tissue specificity
Detected in all
MTF1
ENSSSCG00000037516
ENSG00000188786
Metal regulatory transcription factor 1
Low tissue specificity
Detected in all
MTG2
ENSSSCG00000037369
ENSG00000101181
Mitochondrial ribosome associated GTPase 2
Low tissue specificity
Detected in all
MTHFR
ENSSSCG00000003428
ENSG00000177000
Methylenetetrahydrofolate reductase
Tissue enriched
Detected in all
epididymis:
94.0
MTHFSD
ENSSSCG00000002660
ENSG00000103248
Methenyltetrahydrofolate synthetase domain containing
Low tissue specificity
Detected in all
MTIF2
ENSSSCG00000008404
ENSG00000085760
Mitochondrial translational initiation factor 2
Low tissue specificity
Detected in all
MTIF3
ENSSSCG00000037313
ENSG00000122033
Mitochondrial translational initiation factor 3
Low tissue specificity
Detected in all
MTMR1
ENSSSCG00000012743
ENSG00000063601
Myotubularin related protein 1
Low tissue specificity
Detected in all
MTPAP
ENSSSCG00000011018
ENSG00000107951
Poly(A) RNA polymerase, mitochondrial
Low tissue specificity
Detected in all
MTRR
ENSSSCG00000017100
ENSG00000124275
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
Low tissue specificity
Detected in all
MUL1
ENSSSCG00000028045
ENSG00000090432
Mitochondrial E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
MUM1
ENSSSCG00000013426
ENSG00000160953
Melanoma associated antigen (mutated) 1
Low tissue specificity
Detected in all
MUS81
ENSSSCG00000012973
ENSG00000172732
MUS81 structure-specific endonuclease subunit
Low tissue specificity
Detected in all
MXD4
ENSSSCG00000008687
ENSG00000123933
MAX dimerization protein 4
Low tissue specificity
Detected in all
MYBBP1A
ENSSSCG00000017882
ENSG00000132382
MYB binding protein 1a
Low tissue specificity
Detected in all
MYSM1
ENSSSCG00000003830
ENSG00000162601
Myb like, SWIRM and MPN domains 1
Low tissue specificity
Detected in all
MZF1
ENSSSCG00000031562
ENSG00000099326
Myeloid zinc finger 1
Low tissue specificity
Detected in all
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