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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GPKOW
ENSSSCG00000012291
ENSG00000068394
G-patch domain and KOW motifs
Low tissue specificity
Detected in all
GPR108
ENSSSCG00000013552
ENSG00000125734
G protein-coupled receptor 108
Low tissue specificity
Detected in all
GRAMD1A
ENSSSCG00000002879
ENSG00000089351
GRAM domain containing 1A
Low tissue specificity
Detected in all
GSE1
ENSSSCG00000002664
ENSG00000131149
Gse1 coiled-coil protein
Tissue enhanced
Detected in all
lymphoid tissue:
79.7
GTF2F1
ENSSSCG00000013539
ENSG00000125651
General transcription factor IIF subunit 1
Low tissue specificity
Detected in all
GTF3C1
ENSSSCG00000007815
ENSG00000077235
General transcription factor IIIC subunit 1
Low tissue specificity
Detected in all
GTF3C2
ENSSSCG00000032798
ENSG00000115207
General transcription factor IIIC subunit 2
Low tissue specificity
Detected in all
GTF3C4
ENSSSCG00000005731
ENSG00000125484
General transcription factor IIIC subunit 4
Low tissue specificity
Detected in all
GTF3C5
ENSSSCG00000032110
ENSG00000148308
General transcription factor IIIC subunit 5
Low tissue specificity
Detected in all
GTPBP1
ENSSSCG00000000095
ENSG00000100226
GTP binding protein 1
Low tissue specificity
Detected in all
GTPBP2
ENSSSCG00000001689
ENSG00000172432
GTP binding protein 2
Low tissue specificity
Detected in all
GUCD1
ENSSSCG00000010059
ENSG00000138867
Protein GUCD1
Tissue enhanced
Detected in all
stomach:
53.6
H1FX
ENSSSCG00000011613
ENSG00000184897
H1 histone family member X
Low tissue specificity
Detected in all
H2AFV
ENSSSCG00000016738
ENSG00000105968
H2A histone family member V
Low tissue specificity
Detected in all
H6PD
ENSSSCG00000034502
ENSG00000049239
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase
Low tissue specificity
Detected in all
HAAO
ENSSSCG00000038660
ENSG00000162882
3-hydroxyanthranilate 3,4-dioxygenase
Group enriched
Detected in many
kidney:
43.2
liver:
112.9
HADHA
ENSSSCG00000008571
ENSG00000084754
Trifunctional enzyme subunit alpha, mitochondrial Long-chain enoyl-CoA hydratase Long chain 3-hydroxyacyl-CoA dehydrogenase
Low tissue specificity
Detected in all
HARBI1
ENSSSCG00000013258
ENSG00000180423
Harbinger transposase derived 1
Low tissue specificity
Detected in all
HAUS5
ENSSSCG00000002904
ENSG00000249115
HAUS augmin like complex subunit 5
Low tissue specificity
Detected in all
HAUS6
ENSSSCG00000005173
ENSG00000147874
HAUS augmin like complex subunit 6
Low tissue specificity
Detected in all
HCFC1
ENSSSCG00000012793
ENSG00000172534
Host cell factor C1
Low tissue specificity
Detected in all
HDAC10
ENSSSCG00000000971
ENSG00000100429
Histone deacetylase 10
Low tissue specificity
Detected in many
HDAC3
ENSSSCG00000014388
ENSG00000171720
Histone deacetylase 3
Low tissue specificity
Detected in all
HDAC4
ENSSSCG00000024777
ENSG00000068024
Histone deacetylase 4
Low tissue specificity
Detected in all
HDAC8
ENSSSCG00000021200
ENSG00000147099
Histone deacetylase 8
Tissue enhanced
Detected in all
male glands:
42.4
HDDC3
ENSSSCG00000001820
ENSG00000184508
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
Low tissue specificity
Detected in all
HDHD5
ENSSSCG00000000764
ENSG00000069998
Haloacid dehalogenase like hydrolase domain containing 5
Low tissue specificity
Detected in all
HEATR1
ENSSSCG00000010145
ENSG00000119285
HEAT repeat containing 1
Low tissue specificity
Detected in all
HEATR6
ENSSSCG00000038478
ENSG00000068097
HEAT repeat containing 6
Tissue enhanced
Detected in all
salivary gland:
81.5
HECTD3
ENSSSCG00000003923
ENSG00000126107
HECT domain E3 ubiquitin protein ligase 3
Low tissue specificity
Detected in all
HELB
ENSSSCG00000000477
ENSG00000127311
DNA helicase B
Low tissue specificity
Detected in all
HELQ
ENSSSCG00000009236
ENSG00000163312
Helicase, POLQ like
Low tissue specificity
Detected in all
HELZ
ENSSSCG00000017272
ENSG00000198265
Helicase with zinc finger
Low tissue specificity
Detected in all
HEMK1
ENSSSCG00000025272
ENSG00000114735
HemK methyltransferase family member 1
Low tissue specificity
Detected in all
HENMT1
ENSSSCG00000006846
ENSG00000162639
HEN methyltransferase 1
Tissue enhanced
Detected in many
testis:
20.5
HERC4
ENSSSCG00000038913
ENSG00000148634
HECT and RLD domain containing E3 ubiquitin protein ligase 4
Low tissue specificity
Detected in all
HES7
ENSSSCG00000017982
ENSG00000179111
Hes family bHLH transcription factor 7
Tissue enhanced
Detected in many
cartilage:
9.3
epididymis:
7.2
HGS
ENSSSCG00000033082
ENSG00000185359
Hepatocyte growth factor-regulated tyrosine kinase substrate
Low tissue specificity
Detected in all
HHIPL2
ENSSSCG00000010832
ENSG00000143512
HHIP like 2
Group enriched
Detected in many
cartilage:
71.0
synovial tissue:
27.8
HIC2
ENSSSCG00000036472
ENSG00000169635
HIC ZBTB transcriptional repressor 2
Low tissue specificity
Detected in all
HIF1AN
ENSSSCG00000010555
ENSG00000166135
Hypoxia inducible factor 1 alpha subunit inhibitor
Low tissue specificity
Detected in all
HINFP
ENSSSCG00000015112
ENSG00000172273
Histone H4 transcription factor
Low tissue specificity
Detected in all
HIRA
ENSSSCG00000010118
ENSG00000100084
Histone cell cycle regulator
Low tissue specificity
Detected in all
HIVEP1
ENSSSCG00000001049
ENSG00000095951
Human immunodeficiency virus type I enhancer binding protein 1
Low tissue specificity
Detected in all
HK3
ENSSSCG00000014048
ENSG00000160883
Hexokinase 3
Low tissue specificity
Detected in all
HMBOX1
ENSSSCG00000009682
ENSG00000147421
Homeobox containing 1
Low tissue specificity
Detected in all
HMGN2
ENSSSCG00000003555
Non-histone chromosomal protein HMG-17
Low tissue specificity
Detected in all
HMGN3
ENSSSCG00000004470
ENSG00000118418
High mobility group nucleosome-binding domain-containing protein 3
Low tissue specificity
Detected in all
HMGXB3
ENSSSCG00000014440
ENSG00000113716
HMG-box containing 3
Low tissue specificity
Detected in all
HMGXB4
ENSSSCG00000025780
ENSG00000100281
HMG-box containing 4
Low tissue specificity
Detected in all
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