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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FRAT1
ENSSSCG00000032821
ENSG00000165879
FRAT1, WNT signaling pathway regulator
Low tissue specificity
Detected in many
FRAT2
ENSSSCG00000038904
ENSG00000181274
FRAT2, WNT signaling pathway regulator
Low tissue specificity
Detected in all
FRMD8
ENSSSCG00000012992
ENSG00000126391
FERM domain containing 8
Tissue enhanced
Detected in all
vagus nerve:
47.9
FRRS1
ENSSSCG00000006873
ENSG00000156869
Ferric-chelate reductase 1 precursor
Tissue enhanced
Detected in all
epididymis:
52.6
FRY
ENSSSCG00000009338
ENSG00000073910
FRY microtubule binding protein
Tissue enhanced
Detected in all
cartilage:
79.0
FRYL
ENSSSCG00000008826
ENSG00000075539
FRY like transcription coactivator
Low tissue specificity
Detected in all
FTSJ1
ENSSSCG00000025599
ENSG00000068438
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
Low tissue specificity
Detected in all
FTSJ3
ENSSSCG00000017288
ENSG00000108592
FtsJ RNA methyltransferase homolog 3
Low tissue specificity
Detected in all
FUBP1
ENSSSCG00000003771
ENSG00000162613
Far upstream element binding protein 1
Low tissue specificity
Detected in all
FUK
ENSSSCG00000025425
ENSG00000157353
Fucokinase
Low tissue specificity
Detected in all
FUOM
ENSSSCG00000010791
ENSG00000148803
Fucose mutarotase
Tissue enhanced
Detected in all
liver:
42.5
male glands:
43.9
FURIN
ENSSSCG00000001817
ENSG00000140564
Furin, paired basic amino acid cleaving enzyme
Tissue enhanced
Detected in all
epididymis:
105.6
FUS
ENSSSCG00000030798
ENSG00000089280
RNA-binding protein FUS
Low tissue specificity
Detected in all
GABPA
ENSSSCG00000037655
ENSG00000154727
GA binding protein transcription factor alpha subunit
Low tissue specificity
Detected in all
GABPB1
ENSSSCG00000004645
ENSG00000104064
GA binding protein transcription factor beta subunit 1
Low tissue specificity
Detected in all
GAK
ENSSSCG00000021289
ENSG00000178950
Cyclin G associated kinase
Low tissue specificity
Detected in all
GALNS
ENSSSCG00000002645
ENSG00000141012
N-acetylgalactosamine-6-sulfatase precursor
Low tissue specificity
Detected in all
GAPVD1
ENSSSCG00000005602
ENSG00000165219
GTPase activating protein and VPS9 domains 1
Low tissue specificity
Detected in all
GART
ENSSSCG00000030677
ENSG00000159131
Phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
Low tissue specificity
Detected in all
GAS8
ENSSSCG00000002633
ENSG00000141013
Growth arrest specific 8
Low tissue specificity
Detected in all
GATA1
ENSSSCG00000027237
ENSG00000102145
Erythroid transcription factor
Low tissue specificity
Detected in many
GATA3
ENSSSCG00000011125
ENSG00000107485
Trans-acting T-cell-specific transcription factor GATA-3
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
129.9
skin:
97.0
urinary bladder:
53.3
GATB
ENSSSCG00000009015
ENSG00000059691
Glutamyl-tRNA amidotransferase subunit B
Low tissue specificity
Detected in all
GBA2
ENSSSCG00000005319
ENSG00000070610
Non-lysosomal glucosylceramidase
Low tissue specificity
Detected in all
GCDH
ENSSSCG00000013729
ENSG00000105607
Glutaryl-CoA dehydrogenase
Low tissue specificity
Detected in all
GCFC2
ENSSSCG00000021287
ENSG00000005436
GC-rich sequence DNA-binding factor 2
Low tissue specificity
Detected in all
GCHFR
ENSSSCG00000032022
ENSG00000188277
GTP cyclohydrolase 1 feedback regulatory protein
Low tissue specificity
Detected in all
GCNT2
ENSSSCG00000033009
ENSG00000111846
Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
Low tissue specificity
Detected in all
GDPD3
ENSSSCG00000021811
ENSG00000102886
Glycerophosphodiester phosphodiesterase domain containing 3
Tissue enhanced
Detected in many
lens:
31.0
GGA3
ENSSSCG00000017211
ENSG00000125447
Golgi associated, gamma adaptin ear containing, ARF binding protein 3
Low tissue specificity
Detected in all
GGNBP2
ENSSSCG00000017688
ENSG00000278311
Gametogenetin binding protein 2
Low tissue specificity
Detected in all
GIGYF1
ENSSSCG00000007668
ENSG00000146830
GRB10 interacting GYF protein 1
Low tissue specificity
Detected in all
GIGYF2
ENSSSCG00000016291
ENSG00000204120
GRB10 interacting GYF protein 2
Low tissue specificity
Detected in all
GINS2
ENSSSCG00000040386
ENSG00000131153
GINS complex subunit 2
Group enriched
Detected in all
lymphoid tissue:
44.7
stomach:
11.6
GINS3
ENSSSCG00000002802
ENSG00000181938
DNA replication complex GINS protein PSF3
Low tissue specificity
Detected in many
GJA10
ENSSSCG00000004330
ENSG00000135355
Gap junction alpha-10 protein
Tissue enhanced
Detected in many
epididymis:
9.3
GLB1L
ENSSSCG00000016213
ENSG00000163521
Galactosidase beta 1 like
Tissue enhanced
Detected in all
kidney:
50.3
testis:
56.4
GLE1
ENSSSCG00000005652
ENSG00000119392
GLE1, RNA export mediator
Low tissue specificity
Detected in all
GMEB1
ENSSSCG00000038872
ENSG00000162419
Glucocorticoid modulatory element binding protein 1
Low tissue specificity
Detected in all
GMEB2
ENSSSCG00000040107
ENSG00000101216
Glucocorticoid modulatory element binding protein 2
Low tissue specificity
Detected in all
GNAI3
ENSSSCG00000006824
ENSG00000065135
Guanine nucleotide-binding protein G(k) subunit alpha
Low tissue specificity
Detected in all
GNL2
ENSSSCG00000031631
ENSG00000134697
G protein nucleolar 2
Low tissue specificity
Detected in all
GNL3
ENSSSCG00000011449
ENSG00000163938
G protein nucleolar 3
Low tissue specificity
Detected in all
GOLGA1
ENSSSCG00000005597
ENSG00000136935
Golgin A1
Low tissue specificity
Detected in all
GOLGA4
ENSSSCG00000011243
ENSG00000144674
Golgin A4
Low tissue specificity
Detected in all
GORAB
ENSSSCG00000006280
ENSG00000120370
Golgin, RAB6 interacting
Tissue enhanced
Detected in all
male glands:
78.3
GOSR1
ENSSSCG00000029262
ENSG00000108587
Golgi SNAP receptor complex member 1
Low tissue specificity
Detected in all
GPATCH1
ENSSSCG00000002865
ENSG00000076650
G-patch domain containing 1
Low tissue specificity
Detected in all
GPATCH2
ENSSSCG00000027207
ENSG00000092978
G-patch domain containing 2
Low tissue specificity
Detected in all
GPATCH3
ENSSSCG00000003564
ENSG00000198746
G-patch domain containing 3
Low tissue specificity
Detected in all
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