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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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2285 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EYA3
ENSSSCG00000003580
ENSG00000158161
EYA transcriptional coactivator and phosphatase 3
Low tissue specificity
Detected in all
EZH1
ENSSSCG00000017382
ENSG00000108799
Histone-lysine N-methyltransferase EZH1
Low tissue specificity
Detected in all
FAAP100
ENSSSCG00000029616
ENSG00000185504
Fanconi anemia core complex associated protein 100
Low tissue specificity
Detected in all
FADD
ENSSSCG00000030888
ENSG00000168040
FAS-associated death domain protein
Low tissue specificity
Detected in all
FAF2
ENSSSCG00000014057
ENSG00000113194
Fas associated factor family member 2
Low tissue specificity
Detected in all
FAM109A
ENSSSCG00000009832
ENSG00000198324
Family with sequence similarity 109 member A
Tissue enhanced
Detected in all
ovary:
32.3
FAM117A
ENSSSCG00000017551
ENSG00000121104
Family with sequence similarity 117 member A
Low tissue specificity
Detected in all
FAM118A
ENSSSCG00000000014
ENSG00000100376
Family with sequence similarity 118 member A
Low tissue specificity
Detected in all
FAM120B
ENSSSCG00000029697
ENSG00000112584
Family with sequence similarity 120B
Low tissue specificity
Detected in all
FAM149B1
ENSSSCG00000026898
ENSG00000138286
Family with sequence similarity 149 member B1
Low tissue specificity
Detected in all
FAM160A2
ENSSSCG00000014632
ENSG00000051009
Family with sequence similarity 160 member A2
Low tissue specificity
Detected in all
FAM160B1
ENSSSCG00000010652
ENSG00000151553
Family with sequence similarity 160 member B1
Low tissue specificity
Detected in all
FAM193A
ENSSSCG00000029745
ENSG00000125386
Family with sequence similarity 193 member A
Low tissue specificity
Detected in all
FAM193B
ENSSSCG00000014038
ENSG00000146067
Protein FAM193B
Low tissue specificity
Detected in all
FAM217B
ENSSSCG00000007531
ENSG00000196227
Family with sequence similarity 217 member B
Low tissue specificity
Detected in all
FAM219B
ENSSSCG00000029776
ENSG00000178761
Protein FAM219B
Low tissue specificity
Detected in all
FAM222B
ENSSSCG00000039321
ENSG00000173065
Family with sequence similarity 222 member B
Low tissue specificity
Detected in all
FAM46C
ENSSSCG00000006729
ENSG00000183508
Protein FAM46C
Tissue enhanced
Detected in all
lens:
86.2
male glands:
78.3
testis:
66.6
FAM50A
ENSSSCG00000025303
ENSG00000071859
Family with sequence similarity 50 member A
Low tissue specificity
Detected in all
FAM53B
ENSSSCG00000010732
ENSG00000189319
Family with sequence similarity 53 member B
Tissue enhanced
Detected in all
lymphoid tissue:
53.7
FAM76B
ENSSSCG00000014967
ENSG00000077458
Family with sequence similarity 76 member B
Low tissue specificity
Detected in all
FANCG
ENSSSCG00000034874
ENSG00000221829
Fanconi anemia complementation group G
Low tissue specificity
Detected in all
FARP2
ENSSSCG00000016368
ENSG00000006607
FERM, ARH/RhoGEF and pleckstrin domain protein 2
Tissue enhanced
Detected in all
salivary gland:
46.4
FARS2
ENSSSCG00000038717
ENSG00000145982
Phenylalanyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
FASTKD3
ENSSSCG00000017099
ENSG00000124279
FAST kinase domains 3
Low tissue specificity
Detected in all
FBF1
ENSSSCG00000017197
ENSG00000188878
Fas binding factor 1
Tissue enhanced
Detected in all
testis:
61.1
FBRS
ENSSSCG00000025794
ENSG00000156860
Fibrosin
Low tissue specificity
Detected in all
FBXL17
ENSSSCG00000014190
ENSG00000145743
F-box and leucine rich repeat protein 17
Low tissue specificity
Detected in all
FBXL19
ENSSSCG00000028186
ENSG00000099364
F-box and leucine rich repeat protein 19
Low tissue specificity
Detected in all
FBXL20
ENSSSCG00000017506
ENSG00000108306
F-box and leucine rich repeat protein 20
Low tissue specificity
Detected in all
FBXL4
ENSSSCG00000004347
ENSG00000112234
F-box/LRR-repeat protein 4
Low tissue specificity
Detected in all
FBXO18
ENSSSCG00000030030
ENSG00000134452
F-box protein, helicase, 18
Low tissue specificity
Detected in all
FBXO38
ENSSSCG00000014427
ENSG00000145868
F-box protein 38
Low tissue specificity
Detected in all
FCF1
ENSSSCG00000039202
ENSG00000119616
FCF1, rRNA-processing protein
Low tissue specificity
Detected in all
FGD6
ENSSSCG00000000901
ENSG00000180263
FYVE, RhoGEF and PH domain containing 6
Low tissue specificity
Detected in all
FGF17
ENSSSCG00000009609
ENSG00000158815
Fibroblast growth factor 17
Tissue enhanced
Detected in many
epididymis:
19.5
FGF22
ENSSSCG00000039236
ENSG00000070388
Fibroblast growth factor 22
Low tissue specificity
Detected in all
FGGY
ENSSSCG00000003828
ENSG00000172456
FGGY carbohydrate kinase domain containing
Tissue enhanced
Detected in all
liver:
41.7
FHOD1
ENSSSCG00000026116
ENSG00000135723
Formin homology 2 domain containing 1
Tissue enhanced
Detected in many
skeletal muscle:
57.2
FIG4
ENSSSCG00000004405
ENSG00000112367
Polyphosphoinositide phosphatase
Low tissue specificity
Detected in all
FKBP15
ENSSSCG00000005477
ENSG00000119321
FK506 binding protein 15
Low tissue specificity
Detected in all
FMO4
ENSSSCG00000015266
ENSG00000076258
Flavin containing monooxygenase 4
Low tissue specificity
Detected in many
FNBP4
ENSSSCG00000030610
ENSG00000109920
Formin binding protein 4
Low tissue specificity
Detected in all
FNIP2
ENSSSCG00000031175
ENSG00000052795
Folliculin interacting protein 2
Low tissue specificity
Detected in all
FOXJ3
ENSSSCG00000023266
ENSG00000198815
Forkhead box J3
Low tissue specificity
Detected in all
FOXK2
ENSSSCG00000017125
ENSG00000141568
Forkhead box K2
Low tissue specificity
Detected in all
FOXN3
ENSSSCG00000002429
ENSG00000053254
Forkhead box protein N3
Low tissue specificity
Detected in all
FOXO6
ENSSSCG00000035074
ENSG00000204060
Forkhead box O6
Tissue enhanced
Detected in many
stomach:
33.9
FOXP4
ENSSSCG00000001619
ENSG00000137166
Forkhead box P4
Tissue enhanced
Detected in all
stomach:
61.9
FPGS
ENSSSCG00000005626
ENSG00000136877
Folylpolyglutamate synthase
Low tissue specificity
Detected in all
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