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UMAP gene cluster
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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402 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PRRT1B
ENSSSCG00000031465
ENSG00000283526
Proline rich transmembrane protein 1B
Tissue enhanced
Detected in all
kidney:
28.2
PRSS22
ENSSSCG00000035594
ENSG00000005001
Serine protease 22
Tissue enriched
Detected in all
male glands:
44.5
PRSS48
ENSSSCG00000009017
ENSG00000189099
Serine protease 48
Tissue enhanced
Detected in many
choroid plexus:
43.9
PRSS8
ENSSSCG00000038600
ENSG00000052344
Serine protease 8
Tissue enhanced
Detected in many
large intestine:
54.7
male glands:
47.0
stomach:
58.7
PSAPL1
ENSSSCG00000008714
ENSG00000178597
Prosaposin like 1 (gene/pseudogene)
Group enriched
Detected in some
breast:
6.7
cornea:
10.1
male glands:
13.7
skin:
5.4
urinary bladder:
17.8
PTK7
ENSSSCG00000001660
ENSG00000112655
Protein tyrosine kinase 7 (inactive)
Low tissue specificity
Detected in all
PTPN3
ENSSSCG00000005449
ENSG00000070159
Protein tyrosine phosphatase, non-receptor type 3
Low tissue specificity
Detected in all
PTPRF
ENSSSCG00000035849
ENSG00000142949
Protein tyrosine phosphatase, receptor type F
Low tissue specificity
Detected in many
PTPRJ
ENSSSCG00000023709
ENSG00000149177
Protein tyrosine phosphatase, receptor type J
Low tissue specificity
Detected in all
RAB25
ENSSSCG00000039186
ENSG00000132698
RAB25, member RAS oncogene family
Low tissue specificity
Detected in all
RASEF
ENSSSCG00000040707
ENSG00000165105
RAS and EF-hand domain containing
Tissue enhanced
Detected in many
male glands:
54.7
salivary gland:
27.2
stomach:
53.9
RASSF6
ENSSSCG00000008952
ENSG00000169435
Ras association domain family member 6
Tissue enhanced
Detected in many
liver:
25.1
RBBP8NL
ENSSSCG00000007539
ENSG00000130701
RBBP8 N-terminal like
Tissue enhanced
Detected in many
male glands:
15.7
salivary gland:
14.5
REEP6
ENSSSCG00000026387
ENSG00000115255
Receptor accessory protein 6
Tissue enhanced
Detected in many
retina:
114.8
testis:
56.8
RFX6
ENSSSCG00000039333
ENSG00000185002
Regulatory factor X6
Tissue enhanced
Detected in some
endometrium:
16.0
esophagus:
11.9
salivary gland:
43.3
RHOF
ENSSSCG00000009807
ENSG00000139725
Rho-related GTP-binding protein RhoF
Low tissue specificity
Detected in all
RHOV
ENSSSCG00000004758
ENSG00000104140
Rho-related GTP-binding protein RhoV
Tissue enhanced
Detected in many
cornea:
15.0
male glands:
40.4
RIPK4
ENSSSCG00000012083
ENSG00000183421
Receptor interacting serine/threonine kinase 4
Tissue enhanced
Detected in all
cornea:
27.1
RNF144B
ENSSSCG00000001076
ENSG00000137393
Ring finger protein 144B
Low tissue specificity
Detected in all
RNF223
ENSSSCG00000034107
ENSG00000237330
Ring finger protein 223
Tissue enhanced
Detected in many
mouth:
29.3
stomach:
19.8
RNF43
ENSSSCG00000017640
ENSG00000108375
Ring finger protein 43
Tissue enhanced
Detected in many
male glands:
47.9
stomach:
25.4
RORC
ENSSSCG00000026427
ENSG00000143365
RAR related orphan receptor C
Tissue enhanced
Detected in many
liver:
41.5
lymphoid tissue:
53.4
male glands:
45.5
S100A2
ENSSSCG00000006580
ENSG00000196754
S100 calcium binding protein A2
Tissue enhanced
Detected in many
mouth:
105.0
skin:
69.0
SCIN
ENSSSCG00000015353
ENSG00000006747
Adseverin
Tissue enhanced
Detected in many
kidney:
43.1
male glands:
34.2
SCNN1A
ENSSSCG00000000707
ENSG00000111319
Amiloride-sensitive sodium channel subunit alpha
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
40.2
stomach:
37.7
SCNN1B
ENSSSCG00000028923
ENSG00000168447
Sodium channel epithelial 1 beta subunit
Tissue enhanced
Detected in many
kidney:
24.3
stomach:
38.0
SCNN1G
ENSSSCG00000007836
ENSG00000166828
Sodium channel epithelial 1 gamma subunit
Tissue enhanced
Detected in all
kidney:
30.7
stomach:
28.0
SDC1
ENSSSCG00000008601
ENSG00000115884
Syndecan-1 precursor
Tissue enhanced
Detected in many
cornea:
68.8
gallbladder:
85.8
ovary:
105.1
SELRC1
ENSSSCG00000027119
ENSG00000162377
Sel1 repeat containing 1
Low tissue specificity
Detected in all
SEMA4B
ENSSSCG00000031719
ENSG00000185033
Semaphorin 4B
Low tissue specificity
Detected in all
SFXN2
ENSSSCG00000010589
ENSG00000156398
Sideroflexin 2
Tissue enhanced
Detected in all
kidney:
28.3
male glands:
35.3
SGMS1
ENSSSCG00000010433
ENSG00000198964
Phosphatidylcholine:ceramide cholinephosphotransferase 1
Low tissue specificity
Detected in all
SH2D4A
ENSSSCG00000033750
ENSG00000104611
SH2 domain containing 4A
Tissue enhanced
Detected in many
stomach:
28.6
SH3BP4
ENSSSCG00000034692
ENSG00000130147
SH3 domain binding protein 4
Low tissue specificity
Detected in all
SHROOM3
ENSSSCG00000008984
ENSG00000138771
Shroom family member 3
Tissue enhanced
Detected in many
ductus deferens:
63.6
salivary gland:
51.6
stomach:
71.7
SLC12A8
ENSSSCG00000011860
ENSG00000221955
Solute carrier family 12 member 8
Tissue enhanced
Detected in many
esophagus:
16.0
male glands:
38.3
salivary gland:
15.7
SLC16A11
ENSSSCG00000017925
ENSG00000174326
Solute carrier family 16 member 11
Tissue enhanced
Detected in many
lung:
29.4
male glands:
32.1
thyroid gland:
34.2
upper respiratory system:
45.3
SLC16A13
ENSSSCG00000017926
ENSG00000174327
Solute carrier family 16 member 13
Tissue enhanced
Detected in many
lung:
29.5
SLC23A1
ENSSSCG00000026423
ENSG00000170482
Solute carrier family 23 member 1
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
31.0
SLC28A3
ENSSSCG00000010960
ENSG00000197506
Solute carrier family 28 member 3
Tissue enriched
Detected in some
male glands:
65.7
SLC31A1
ENSSSCG00000034278
ENSG00000136868
High affinity copper uptake protein 1
Low tissue specificity
Detected in all
SLC35C1
ENSSSCG00000025647
ENSG00000181830
GDP-fucose transporter 1
Tissue enhanced
Detected in all
male glands:
33.3
SLC37A1
ENSSSCG00000012087
ENSG00000160190
Solute carrier family 37 member 1
Low tissue specificity
Detected in all
SLC39A11
ENSSSCG00000037754
ENSG00000133195
Solute carrier family 39 member 11
Tissue enhanced
Detected in many
male glands:
53.7
SLC39A8
ENSSSCG00000009169
ENSG00000138821
Solute carrier family 39 member 8
Tissue enhanced
Detected in many
male glands:
64.5
mesothelial tissue:
55.2
upper respiratory system:
35.1
SLC44A3
ENSSSCG00000006888
ENSG00000143036
Solute carrier family 44 member 3
Tissue enhanced
Detected in many
male glands:
32.7
SLC45A4
ENSSSCG00000005930
ENSG00000022567
Solute carrier family 45 member 4
Low tissue specificity
Detected in all
SLC4A11
ENSSSCG00000007157
ENSG00000088836
Solute carrier family 4 member 11
Tissue enhanced
Detected in many
cornea:
94.2
kidney:
44.4
SLC7A4
ENSSSCG00000010102
ENSG00000099960
Cationic amino acid transporter 4
Tissue enhanced
Detected in many
choroid plexus:
25.7
male glands:
15.2
urinary bladder:
26.1
SLC9A2
ENSSSCG00000008153
ENSG00000115616
Sodium/hydrogen exchanger 2 precursor
Tissue enhanced
Detected in all
large intestine:
27.8
stomach:
41.3
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