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UMAP gene cluster
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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402 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC9A3R1
ENSSSCG00000017232
ENSG00000109062
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Tissue enhanced
Detected in many
kidney:
85.7
SLCO4C1
ENSSSCG00000014182
ENSG00000173930
Solute carrier organic anion transporter family member 4C1
Tissue enhanced
Detected in many
kidney:
24.7
salivary gland:
17.0
upper respiratory system:
13.8
SLITRK6
ENSSSCG00000009486
ENSG00000184564
SLIT and NTRK like family member 6
Tissue enhanced
Detected in many
salivary gland:
36.9
SLK
ENSSSCG00000010606
ENSG00000065613
STE20 like kinase
Low tissue specificity
Detected in all
SMPDL3B
ENSSSCG00000003582
ENSG00000130768
Sphingomyelin phosphodiesterase acid like 3B
Tissue enhanced
Detected in all
liver:
63.2
SOWAHB
ENSSSCG00000008985
ENSG00000186212
Sosondowah ankyrin repeat domain family member B
Tissue enhanced
Detected in many
stomach:
29.5
SPDEF
ENSSSCG00000036573
ENSG00000124664
SAM pointed domain-containing Ets transcription factor
Tissue enhanced
Detected in many
esophagus:
34.5
male glands:
76.2
salivary gland:
35.7
SPHK2
ENSSSCG00000030425
ENSG00000063176
Sphingosine kinase 2
Low tissue specificity
Detected in all
SPINT1
ENSSSCG00000004759
ENSG00000166145
Kunitz-type protease inhibitor 1 precursor
Tissue enhanced
Detected in many
male glands:
48.9
SPINT2
ENSSSCG00000002954
ENSG00000167642
Serine peptidase inhibitor, Kunitz type 2
Tissue enhanced
Detected in many
male glands:
146.6
SRC
ENSSSCG00000007334
ENSG00000197122
SRC proto-oncogene, non-receptor tyrosine kinase
Low tissue specificity
Detected in all
ST14
ENSSSCG00000015246
ENSG00000149418
Suppression of tumorigenicity 14
Tissue enhanced
Detected in many
male glands:
36.3
stomach:
56.4
ST6GALNAC1
ENSSSCG00000017172
ENSG00000070526
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Tissue enhanced
Detected in all
male glands:
80.3
STAC2
ENSSSCG00000017508
ENSG00000141750
SH3 and cysteine rich domain 2
Tissue enhanced
Detected in many
breast:
99.5
male glands:
26.4
STAP2
ENSSSCG00000013506
ENSG00000178078
Signal transducing adaptor family member 2
Tissue enhanced
Detected in many
male glands:
21.4
small intestine:
30.3
STARD10
ENSSSCG00000014818
ENSG00000214530
PCTP-like protein
Tissue enhanced
Detected in all
liver:
54.9
stomach:
74.4
STX3
ENSSSCG00000013119
ENSG00000166900
Syntaxin 3
Tissue enhanced
Detected in many
retina:
73.9
SVOPL
ENSSSCG00000016517
ENSG00000157703
SVOP like
Group enriched
Detected in some
lung:
33.0
male glands:
37.6
upper respiratory system:
23.3
SYNE4
ENSSSCG00000002929
ENSG00000181392
Spectrin repeat containing nuclear envelope family member 4
Tissue enhanced
Detected in many
male glands:
29.1
salivary gland:
15.6
SYTL1
ENSSSCG00000003572
ENSG00000142765
Synaptotagmin like 1
Tissue enhanced
Detected in many
cornea:
35.9
male glands:
35.4
stomach:
26.0
TACSTD2
ENSSSCG00000003832
ENSG00000184292
Tumor associated calcium signal transducer 2
Tissue enhanced
Detected in many
cornea:
60.8
upper respiratory system:
52.2
urinary bladder:
76.7
TC2N
ENSSSCG00000002443
ENSG00000165929
Tandem C2 domains, nuclear
Tissue enhanced
Detected in many
male glands:
33.1
upper respiratory system:
31.0
TDGF1
ENSSSCG00000023395
ENSG00000241186
Teratocarcinoma-derived growth factor 1
Tissue enhanced
Detected in many
fallopian tube:
23.4
TFAP2A
ENSSSCG00000001036
ENSG00000137203
Transcription factor AP-2 alpha
Tissue enhanced
Detected in many
epididymis:
64.5
male glands:
52.5
skin:
56.0
TFAP2B
ENSSSCG00000025535
ENSG00000008196
Transcription factor AP-2-beta
Group enriched
Detected in many
breast:
49.4
epididymis:
82.5
TFCP2L1
ENSSSCG00000015732
ENSG00000115112
Transcription factor CP2 like 1
Tissue enhanced
Detected in many
kidney:
72.4
salivary gland:
96.6
upper respiratory system:
48.5
TJP3
ENSSSCG00000013491
ENSG00000105289
Tight junction protein 3
Tissue enhanced
Detected in many
stomach:
42.5
TMC4
ENSSSCG00000003266
ENSG00000167608
Transmembrane channel like 4
Tissue enhanced
Detected in many
male glands:
35.2
TMEM139
ENSSSCG00000031799
ENSG00000178826
Transmembrane protein 139
Low tissue specificity
Detected in all
TMEM62
ENSSSCG00000004716
ENSG00000137842
Transmembrane protein 62
Tissue enhanced
Detected in all
male glands:
34.4
TMEM79
ENSSSCG00000006489
ENSG00000163472
Transmembrane protein 79
Tissue enhanced
Detected in many
male glands:
27.1
stomach:
19.7
TMTC4
ENSSSCG00000009524
ENSG00000125247
Transmembrane and TPR repeat-containing protein 4
Low tissue specificity
Detected in all
TNFSF13
ENSSSCG00000036521
ENSG00000161955
Tumor necrosis factor ligand superfamily member 13
Tissue enhanced
Detected in many
choroid plexus:
27.5
upper respiratory system:
35.5
TOM1L1
ENSSSCG00000017601
ENSG00000141198
Target of myb1 like 1 membrane trafficking protein
Tissue enhanced
Detected in many
male glands:
48.1
TP63
ENSSSCG00000025592
ENSG00000073282
Tumor protein p63
Tissue enhanced
Detected in many
mouth:
48.3
skin:
103.2
urinary bladder:
41.9
TP73
ENSSSCG00000025685
ENSG00000078900
Tumor protein p73
Tissue enhanced
Detected in many
fallopian tube:
33.6
lung:
18.9
skin:
24.2
upper respiratory system:
23.3
TRAF4
ENSSSCG00000032658
ENSG00000076604
TNF receptor associated factor 4
Low tissue specificity
Detected in all
TRPV4
ENSSSCG00000009929
ENSG00000111199
Transient receptor potential cation channel subfamily V member 4
Tissue enriched
Detected in many
cartilage:
99.6
TSPAN1
ENSSSCG00000003908
ENSG00000117472
Tetraspanin-1
Group enriched
Detected in many
large intestine:
150.0
male glands:
58.1
stomach:
183.8
upper respiratory system:
104.3
TSTA3
ENSSSCG00000031698
ENSG00000104522
Tissue specific transplantation antigen P35B
Tissue enhanced
Detected in all
male glands:
54.2
TSTD1
ENSSSCG00000006370
ENSG00000215845
Thiosulfate sulfurtransferase like domain containing 1
Tissue enhanced
Detected in many
male glands:
50.7
TTC39A
ENSSSCG00000003875
ENSG00000085831
Tetratricopeptide repeat domain 39A
Tissue enhanced
Detected in many
male glands:
74.3
TUFT1
ENSSSCG00000006620
ENSG00000143367
Tuftelin 1
Tissue enhanced
Detected in many
cornea:
46.7
USP43
ENSSSCG00000017995
ENSG00000154914
Ubiquitin specific peptidase 43
Tissue enhanced
Detected in many
salivary gland:
18.0
UTP20
ENSSSCG00000000869
ENSG00000120800
UTP20, small subunit processome component
Tissue enhanced
Detected in all
male glands:
45.7
VILL
ENSSSCG00000011246
ENSG00000136059
Villin like
Tissue enhanced
Detected in many
stomach:
50.8
VWA7
ENSSSCG00000036796
ENSG00000204396
Von Willebrand factor A domain-containing protein 7 precursor
Tissue enhanced
Detected in many
thyroid gland:
23.3
WDR90
ENSSSCG00000007991
ENSG00000161996
WD repeat domain 90
Tissue enhanced
Detected in many
fallopian tube:
22.0
WDSUB1
ENSSSCG00000035702
ENSG00000196151
WD repeat, sterile alpha motif and U-box domain containing 1
Tissue enhanced
Detected in all
thyroid gland:
33.9
WFDC2
ENSSSCG00000033003
ENSG00000101443
WAP four-disulfide core domain protein 2
Tissue enhanced
Detected in many
endometrium:
69.1
upper respiratory system:
173.1
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