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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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402 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
IRX1
ENSSSCG00000034884
ENSG00000170549
Iroquois homeobox 1
Tissue enhanced
Detected in many
breast:
42.9
esophagus:
28.4
salivary gland:
50.8
skin:
34.9
IRX3
ENSSSCG00000002831
ENSG00000177508
Iroquois homeobox 3
Tissue enhanced
Detected in many
breast:
24.6
male glands:
63.3
IRX5
ENSSSCG00000032145
ENSG00000176842
Iroquois homeobox 5
Tissue enhanced
Detected in many
breast:
32.9
male glands:
51.4
ISL1
ENSSSCG00000016883
ENSG00000016082
ISL LIM homeobox 1
Tissue enhanced
Detected in many
male glands:
16.6
penis:
36.4
ITGA2
ENSSSCG00000016887
ENSG00000164171
Integrin alpha-2 precursor
Low tissue specificity
Detected in many
ITGA3
ENSSSCG00000017578
ENSG00000005884
Integrin subunit alpha 3
Low tissue specificity
Detected in many
ITGB6
ENSSSCG00000015886
ENSG00000115221
Integrin beta-6 precursor
Tissue enhanced
Detected in many
epididymis:
22.6
heart:
30.6
skeletal muscle:
26.4
KCNJ15
ENSSSCG00000012066
ENSG00000157551
Potassium voltage-gated channel subfamily J member 15
Tissue enriched
Detected in many
kidney:
125.9
KCNN4
ENSSSCG00000003069
ENSG00000104783
Intermediate conductance calcium-activated potassium channel protein 4
Tissue enhanced
Detected in some
esophagus:
17.7
male glands:
41.4
salivary gland:
35.3
upper respiratory system:
24.5
KDF1
ENSSSCG00000003567
ENSG00000175707
Keratinocyte differentiation factor 1
Low tissue specificity
Detected in many
KIF12
ENSSSCG00000005486
ENSG00000136883
Kinesin family member 12
Tissue enhanced
Detected in many
kidney:
56.3
KLC3
ENSSSCG00000039864
ENSG00000104892
Kinesin light chain 3
Tissue enhanced
Detected in many
cornea:
19.7
mouth:
20.9
skin:
32.6
KLC4
ENSSSCG00000001659
ENSG00000137171
Kinesin light chain 4
Low tissue specificity
Detected in all
KLF5
ENSSSCG00000035101
ENSG00000102554
Krueppel-like factor 5
Tissue enhanced
Detected in many
large intestine:
80.4
stomach:
60.7
upper respiratory system:
64.6
KLHDC7A
ENSSSCG00000023732
ENSG00000179023
Kelch domain containing 7A
Tissue enhanced
Detected in many
epididymis:
27.1
kidney:
27.2
male glands:
54.8
KREMEN1
ENSSSCG00000009972
ENSG00000183762
Kringle containing transmembrane protein 1
Low tissue specificity
Detected in all
KRT14
ENSSSCG00000017448
ENSG00000186847
Keratin 14
Tissue enhanced
Detected in many
large intestine:
131.5
mouth:
166.7
skin:
199.4
KRT18
ENSSSCG00000000253
ENSG00000111057
Keratin 18
Tissue enhanced
Detected in many
gallbladder:
41.8
male glands:
48.4
salivary gland:
54.6
KRT7
ENSSSCG00000038966
ENSG00000135480
Keratin 7
Tissue enhanced
Detected in many
breast:
50.7
gallbladder:
38.2
salivary gland:
40.2
KRT8
ENSSSCG00000000252
ENSG00000170421
Keratin, type II cytoskeletal 8
Tissue enhanced
Detected in many
gallbladder:
64.3
large intestine:
167.1
stomach:
63.3
KRT80
ENSSSCG00000040636
ENSG00000167767
Keratin 80
Tissue enhanced
Detected in all
salivary gland:
44.8
LAMB3
ENSSSCG00000015618
ENSG00000196878
Laminin subunit beta 3
Tissue enhanced
Detected in many
thyroid gland:
48.3
LAMC2
ENSSSCG00000015556
ENSG00000058085
Laminin subunit gamma 2
Tissue enhanced
Detected in many
stomach:
44.7
LARGE2
ENSSSCG00000013266
ENSG00000165905
LARGE xylosyl- and glucuronyltransferase 2
Tissue enhanced
Detected in many
male glands:
53.5
salivary gland:
35.3
LBX2
ENSSSCG00000008278
ENSG00000179528
Ladybird homeobox 2
Group enriched
Detected in some
cartilage:
17.5
male glands:
7.5
LIMK2
ENSSSCG00000010025
ENSG00000182541
LIM domain kinase 2
Low tissue specificity
Detected in all
LMO7
ENSSSCG00000040184
ENSG00000136153
LIM domain 7
Tissue enhanced
Detected in many
heart:
81.5
LRRC1
ENSSSCG00000001486
ENSG00000137269
Leucine rich repeat containing 1
Low tissue specificity
Detected in many
LRRC26
ENSSSCG00000032509
ENSG00000184709
Leucine rich repeat containing 26
Tissue enriched
Detected in many
male glands:
160.2
LRRC8E
ENSSSCG00000013586
ENSG00000171017
Leucine rich repeat containing 8 VRAC subunit E
Tissue enhanced
Detected in many
male glands:
21.2
LSR
ENSSSCG00000002884
ENSG00000105699
Lipolysis stimulated lipoprotein receptor
Low tissue specificity
Detected in all
MAB21L3
ENSSSCG00000006742
ENSG00000173212
Mab-21 like 3
Tissue enhanced
Detected in all
liver:
32.8
MACC1
ENSSSCG00000024802
ENSG00000183742
MACC1, MET transcriptional regulator
Low tissue specificity
Detected in many
MAGI3
ENSSSCG00000006767
ENSG00000081026
Membrane associated guanylate kinase, WW and PDZ domain containing 3
Low tissue specificity
Detected in all
MAP3K21
ENSSSCG00000010164
ENSG00000143674
Mitogen-activated protein kinase kinase kinase 21
Low tissue specificity
Detected in all
MAPK13
ENSSSCG00000038774
ENSG00000156711
Mitogen-activated protein kinase 13
Tissue enhanced
Detected in many
male glands:
57.3
MARVELD2
ENSSSCG00000016959
ENSG00000152939
MARVEL domain-containing protein 2
Tissue enhanced
Detected in all
choroid plexus:
35.8
MARVELD3
ENSSSCG00000002734
ENSG00000140832
MARVEL domain-containing protein 3 isoform 1
Tissue enhanced
Detected in many
thyroid gland:
25.4
MCTP2
ENSSSCG00000002257
ENSG00000140563
Multiple C2 and transmembrane domain containing 2
Tissue enhanced
Detected in many
retina:
37.2
MET
ENSSSCG00000024351
ENSG00000105976
Hepatocyte growth factor receptor
Tissue enhanced
Detected in many
thyroid gland:
33.5
METTL21A
ENSSSCG00000036466
ENSG00000144401
Methyltransferase like 21A
Low tissue specificity
Detected in all
MFSD6L
ENSSSCG00000032938
ENSG00000185156
Major facilitator superfamily domain containing 6 like
Tissue enhanced
Detected in many
male glands:
36.5
testis:
14.8
MGST2
ENSSSCG00000031736
ENSG00000085871
Microsomal glutathione S-transferase 2
Tissue enhanced
Detected in many
large intestine:
13.3
MIOX
ENSSSCG00000023749
ENSG00000100253
Inositol oxygenase
Group enriched
Detected in many
kidney:
100.7
thyroid gland:
68.8
MIPEP
ENSSSCG00000009290
ENSG00000027001
Mitochondrial intermediate peptidase
Low tissue specificity
Detected in all
MMP15
ENSSSCG00000002806
ENSG00000102996
Matrix metallopeptidase 15
Tissue enhanced
Detected in all
stomach:
61.4
MPP7
ENSSSCG00000011070
ENSG00000150054
Membrane palmitoylated protein 7
Low tissue specificity
Detected in many
MPZL2
ENSSSCG00000015091
ENSG00000149573
Myelin protein zero-like protein 2 precursor
Tissue enhanced
Detected in many
cornea:
52.8
dura mater:
44.6
mouth:
39.8
MPZL3
ENSSSCG00000015090
ENSG00000160588
Myelin protein zero like 3
Low tissue specificity
Detected in many
MROH6
ENSSSCG00000006948
ENSG00000204839
Maestro heat like repeat family member 6
Tissue enhanced
Detected in many
mouth:
12.4
skin:
9.2
urinary bladder:
13.5
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