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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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402 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM110C
ENSSSCG00000032221
ENSG00000184731
Family with sequence similarity 110 member C
Tissue enhanced
Detected in many
male glands:
34.8
FAM160A1
ENSSSCG00000020717
ENSG00000164142
Family with sequence similarity 160 member A1
Low tissue specificity
Detected in all
FAM177B
ENSSSCG00000010837
ENSG00000197520
Family with sequence similarity 177 member B
Tissue enhanced
Detected in many
esophagus:
29.1
male glands:
76.7
FAM240A
ENSSSCG00000032551
ENSG00000283473
Family with sequence similarity 240 member A
Tissue enhanced
Detected in many
fallopian tube:
17.7
FAM83F
ENSSSCG00000000079
ENSG00000133477
Family with sequence similarity 83 member F
Tissue enhanced
Detected in many
stomach:
29.6
FAM83G
ENSSSCG00000018047
ENSG00000188522
Family with sequence similarity 83 member G
Tissue enhanced
Detected in many
cornea:
18.5
lens:
26.1
FAM83H
ENSSSCG00000036964
ENSG00000180921
Family with sequence similarity 83 member H
Tissue enhanced
Detected in all
stomach:
45.1
FARP1
ENSSSCG00000026863
ENSG00000152767
FERM, ARH/RhoGEF and pleckstrin domain protein 1
Low tissue specificity
Detected in all
FAXDC2
ENSSSCG00000017068
ENSG00000170271
Fatty acid hydroxylase domain containing 2
Low tissue specificity
Detected in all
FBXO4
ENSSSCG00000016865
ENSG00000151876
F-box protein 4
Low tissue specificity
Detected in all
FCGBP
ENSSSCG00000027515
ENSG00000275395
Fc fragment of IgG binding protein
Tissue enriched
Detected in some
male glands:
762.8
FERMT1
ENSSSCG00000007052
ENSG00000101311
Fermitin family member 1
Low tissue specificity
Detected in many
FHDC1
ENSSSCG00000009011
ENSG00000137460
FH2 domain containing 1
Tissue enhanced
Detected in many
stomach:
30.2
FOXA1
ENSSSCG00000037634
ENSG00000129514
Forkhead box A1
Tissue enhanced
Detected in many
breast:
20.5
esophagus:
19.7
male glands:
38.3
upper respiratory system:
22.5
FOXA2
ENSSSCG00000007114
ENSG00000125798
Forkhead box A2
Tissue enhanced
Detected in many
cartilage:
20.4
liver:
22.2
male glands:
33.3
stomach:
37.4
FOXI1
ENSSSCG00000017009
ENSG00000168269
Forkhead box I1
Tissue enriched
Detected in some
kidney:
61.2
FOXQ1
ENSSSCG00000000991
ENSG00000164379
Forkhead box Q1
Group enriched
Detected in many
stomach:
72.9
urinary bladder:
51.6
FRMD4B
ENSSSCG00000011511
ENSG00000114541
FERM domain containing 4B
Low tissue specificity
Detected in all
FUT2
ENSSSCG00000003145
ENSG00000176920
Galactoside 2-alpha-L-fucosyltransferase 2
Tissue enhanced
Detected in many
stomach:
75.6
FYB2
ENSSSCG00000038041
ENSG00000187889
FYN binding protein 2
Tissue enhanced
Detected in many
liver:
26.9
FZD5
ENSSSCG00000016140
ENSG00000163251
Frizzled class receptor 5
Tissue enhanced
Detected in all
large intestine:
44.9
liver:
40.2
GALNT12
ENSSSCG00000005379
ENSG00000119514
Polypeptide N-acetylgalactosaminyltransferase 12
Tissue enhanced
Detected in many
male glands:
101.5
stomach:
29.1
GALNT3
ENSSSCG00000015907
ENSG00000115339
Polypeptide N-acetylgalactosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
44.6
testis:
29.6
GALNT5
ENSSSCG00000026146
ENSG00000136542
Polypeptide N-acetylgalactosaminyltransferase 5
Tissue enhanced
Detected in many
esophagus:
19.6
salivary gland:
22.7
GALNT6
ENSSSCG00000026890
ENSG00000139629
Polypeptide N-acetylgalactosaminyltransferase 6
Tissue enhanced
Detected in many
esophagus:
50.7
male glands:
89.3
salivary gland:
53.5
GAREM1
ENSSSCG00000003731
ENSG00000141441
GRB2 associated regulator of MAPK1 subtype 1
Tissue enhanced
Detected in all
cartilage:
48.6
GJB4
ENSSSCG00000035068
ENSG00000189433
Gap junction protein beta 4
Tissue enhanced
Detected in some
fallopian tube:
6.8
kidney:
5.7
skin:
13.4
GLP2R
ENSSSCG00000017998
ENSG00000065325
Glucagon-like peptide 2 receptor
Tissue enhanced
Detected in many
gallbladder:
27.6
urinary bladder:
21.1
GMDS
ENSSSCG00000000994
ENSG00000112699
GDP-mannose 4,6-dehydratase
Tissue enhanced
Detected in many
male glands:
81.3
GNE
ENSSSCG00000037468
ENSG00000159921
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase
Tissue enriched
Detected in all
male glands:
122.3
GPR39
ENSSSCG00000015707
ENSG00000183840
G protein-coupled receptor 39
Tissue enhanced
Detected in many
liver:
28.1
stomach:
25.8
GPRC5C
ENSSSCG00000040989
ENSG00000170412
G protein-coupled receptor class C group 5 member C
Tissue enhanced
Detected in all
stomach:
56.2
GRB7
ENSSSCG00000017495
ENSG00000141738
Growth factor receptor bound protein 7
Low tissue specificity
Detected in all
GRHL1
ENSSSCG00000026068
ENSG00000134317
Grainyhead like transcription factor 1
Tissue enhanced
Detected in many
mouth:
24.3
salivary gland:
28.2
skin:
42.7
GRHL2
ENSSSCG00000006060
ENSG00000083307
Grainyhead like transcription factor 2
Tissue enhanced
Detected in many
male glands:
51.1
GRHL3
ENSSSCG00000003539
ENSG00000158055
Grainyhead like transcription factor 3
Tissue enhanced
Detected in many
mouth:
38.4
urinary bladder:
24.1
GTF2IRD1
ENSSSCG00000007720
ENSG00000006704
GTF2I repeat domain containing 1
Low tissue specificity
Detected in all
HAS3
ENSSSCG00000035601
ENSG00000103044
Hyaluronan synthase 3
Tissue enhanced
Detected in all
male glands:
26.4
HNF1B
ENSSSCG00000022417
ENSG00000275410
Hepatocyte nuclear factor 1-beta
Tissue enhanced
Detected in many
gallbladder:
24.5
kidney:
75.6
HUNK
ENSSSCG00000029392
ENSG00000142149
Hormonally up-regulated Neu-associated kinase
Tissue enhanced
Detected in many
cornea:
35.6
lens:
35.0
ovary:
37.7
IFN-DELTA-8
ENSSSCG00000039759
Uncharacterized protein LOC100153693 precursor
Tissue enhanced
Detected in many
thyroid gland:
22.6
IFNE
ENSSSCG00000005136
ENSG00000184995
Interferon epsilon
Tissue enhanced
Detected in many
skin:
31.1
thyroid gland:
27.4
IFNG
ENSSSCG00000032963
ENSG00000111537
Interferon gamma
Low tissue specificity
Detected in many
IGSF3
ENSSSCG00000006737
ENSG00000143061
Immunoglobulin superfamily member 3
Low tissue specificity
Detected in all
IGSF5
ENSSSCG00000012071
ENSG00000183067
Immunoglobulin superfamily member 5
Low tissue specificity
Detected in all
IGSF9
ENSSSCG00000006396
ENSG00000085552
Immunoglobulin superfamily member 9
Tissue enhanced
Detected in all
epididymis:
38.3
stomach:
38.5
IL20RA
ENSSSCG00000004157
ENSG00000016402
Interleukin 20 receptor subunit alpha
Tissue enhanced
Detected in all
skin:
26.5
ILDR1
ENSSSCG00000025436
ENSG00000145103
Immunoglobulin like domain containing receptor 1
Tissue enhanced
Detected in many
thyroid gland:
28.5
IMPDH1
ENSSSCG00000016585
ENSG00000106348
Inosine monophosphate dehydrogenase 1
Tissue enhanced
Detected in all
retina:
58.0
IRF6
ENSSSCG00000015612
ENSG00000117595
Interferon regulatory factor 6
Low tissue specificity
Detected in all
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