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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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402 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CEACAM19
ENSSSCG00000003078
ENSG00000186567
Carcinoembryonic antigen related cell adhesion molecule 19
Tissue enhanced
Detected in many
breast:
9.3
mouth:
10.8
salivary gland:
10.8
CELSR1
ENSSSCG00000031361
ENSG00000075275
Cadherin EGF LAG seven-pass G-type receptor 1
Low tissue specificity
Detected in many
CEP170B
ENSSSCG00000002558
ENSG00000099814
Centrosomal protein 170B
Tissue enhanced
Detected in many
epididymis:
69.4
CGN
ENSSSCG00000006621
ENSG00000143375
Cingulin
Tissue enhanced
Detected in many
stomach:
50.2
CHMP4C
ENSSSCG00000025980
ENSG00000164695
Charged multivesicular body protein 4c
Low tissue specificity
Detected in all
CITED4
ENSSSCG00000033952
ENSG00000179862
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4
Tissue enhanced
Detected in many
male glands:
43.1
salivary gland:
72.2
upper respiratory system:
46.4
CLDN23
ENSSSCG00000006966
ENSG00000253958
Claudin-23
Tissue enhanced
Detected in many
male glands:
33.3
CLDN4
ENSSSCG00000007718
ENSG00000189143
Claudin-4
Tissue enhanced
Detected in many
upper respiratory system:
62.5
CLDN7
ENSSSCG00000017934
ENSG00000181885
Claudin-7 precursor
Tissue enhanced
Detected in many
large intestine:
56.5
male glands:
40.9
CLDN8
ENSSSCG00000012030
ENSG00000156284
Claudin-8
Tissue enhanced
Detected in many
breast:
64.0
kidney:
44.5
male glands:
37.7
thyroid gland:
54.2
CLIC3
ENSSSCG00000037395
ENSG00000169583
Chloride intracellular channel 3
Tissue enhanced
Detected in many
cornea:
37.8
thyroid gland:
75.4
CLINT1
ENSSSCG00000017047
ENSG00000113282
Clathrin interactor 1
Tissue enhanced
Detected in all
male glands:
88.1
CNKSR1
ENSSSCG00000028387
ENSG00000142675
Connector enhancer of kinase suppressor of Ras 1
Tissue enhanced
Detected in many
cornea:
22.0
skeletal muscle:
34.5
COL23A1
ENSSSCG00000014029
ENSG00000050767
Collagen type XXIII alpha 1 chain
Tissue enhanced
Detected in many
ductus deferens:
29.1
epididymis:
45.5
thyroid gland:
24.9
COL7A1
ENSSSCG00000011355
ENSG00000114270
Collagen type VII alpha 1 chain
Tissue enhanced
Detected in many
skin:
55.8
CRACR2A
ENSSSCG00000000732
ENSG00000130038
Calcium release activated channel regulator 2A
Tissue enhanced
Detected in many
esophagus:
24.5
large intestine:
26.3
male glands:
37.7
salivary gland:
48.2
stomach:
23.2
CRACR2B
ENSSSCG00000023933
ENSG00000177685
EF-hand calcium-binding domain-containing protein 4A
Tissue enhanced
Detected in many
male glands:
58.9
salivary gland:
73.0
CRB3
ENSSSCG00000013547
ENSG00000130545
Crumbs 3, cell polarity complex component
Tissue enhanced
Detected in many
large intestine:
8.2
male glands:
11.3
stomach:
9.7
CREB3L4
ENSSSCG00000006560
ENSG00000143578
Cyclic AMP-responsive element-binding protein 3-like protein 4
Tissue enhanced
Detected in all
male glands:
52.6
CRYBG2
ENSSSCG00000033539
ENSG00000176092
Crystallin beta-gamma domain containing 2
Tissue enhanced
Detected in many
skin:
52.3
CST6
ENSSSCG00000012960
ENSG00000175315
Cystatin E/M
Tissue enhanced
Detected in many
epididymis:
96.1
male glands:
81.3
skin:
99.4
CYP2R1
ENSSSCG00000013389
ENSG00000186104
Cytochrome P450 family 2 subfamily R member 1
Low tissue specificity
Detected in all
CYP2W1
ENSSSCG00000007549
ENSG00000073067
Cytochrome P450 family 2 subfamily W member 1
Tissue enhanced
Detected in many
stomach:
7.7
urinary bladder:
9.1
CYP4B1
ENSSSCG00000003894
ENSG00000142973
Cytochrome P450 family 4 subfamily B member 1
Tissue enhanced
Detected in many
adipose tissue:
47.5
lung:
64.9
salivary gland:
50.4
upper respiratory system:
47.5
DCPS
ENSSSCG00000015231
ENSG00000110063
M7GpppX diphosphatase
Tissue enhanced
Detected in all
male glands:
74.1
DHX32
ENSSSCG00000010744
ENSG00000089876
DEAH-box helicase 32 (putative)
Low tissue specificity
Detected in all
DNAJC22
ENSSSCG00000000198
ENSG00000178401
DnaJ heat shock protein family (Hsp40) member C22
Tissue enhanced
Detected in many
liver:
31.2
male glands:
31.4
DPP4
ENSSSCG00000015894
ENSG00000197635
Dipeptidyl peptidase 4 Dipeptidyl peptidase 4 membrane form Dipeptidyl peptidase 4 soluble form
Tissue enhanced
Detected in many
liver:
49.9
salivary gland:
49.4
DSC3
ENSSSCG00000024800
ENSG00000134762
Desmocollin 3
Tissue enhanced
Detected in many
cornea:
77.5
mouth:
100.5
skin:
50.9
DSG2
ENSSSCG00000022739
ENSG00000046604
Desmoglein 2
Tissue enhanced
Detected in many
large intestine:
62.7
male glands:
37.6
DSP
ENSSSCG00000001025
ENSG00000096696
Desmoplakin
Tissue enhanced
Detected in all
cornea:
119.8
mouth:
102.2
skin:
94.4
EDARADD
ENSSSCG00000025986
ENSG00000186197
Ectodysplasin-A receptor-associated adapter protein
Low tissue specificity
Detected in many
EFNA4
ENSSSCG00000036831
ENSG00000243364
Ephrin A4
Tissue enhanced
Detected in many
skin:
14.8
EGF
ENSSSCG00000009134
ENSG00000138798
Pro-epidermal growth factor precursor
Tissue enhanced
Detected in many
choroid plexus:
46.4
kidney:
90.0
male glands:
52.2
salivary gland:
32.6
EHF
ENSSSCG00000013300
ENSG00000135373
ETS homologous factor
Tissue enhanced
Detected in many
male glands:
88.9
salivary gland:
88.8
upper respiratory system:
80.8
ELF3
ENSSSCG00000010922
ENSG00000163435
E74 like ETS transcription factor 3
Tissue enhanced
Detected in many
large intestine:
35.4
stomach:
54.7
upper respiratory system:
50.1
urinary bladder:
61.1
EPB41L5
ENSSSCG00000039185
ENSG00000115109
Erythrocyte membrane protein band 4.1 like 5
Tissue enhanced
Detected in all
thyroid gland:
55.0
EPCAM
ENSSSCG00000008429
ENSG00000119888
Epithelial cell adhesion molecule
Tissue enhanced
Detected in many
large intestine:
54.3
male glands:
76.4
EPHB3
ENSSSCG00000026516
ENSG00000182580
EPH receptor B3
Tissue enhanced
Detected in all
male glands:
45.3
EPN3
ENSSSCG00000027226
ENSG00000049283
Epsin 3
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
29.5
salivary gland:
24.1
stomach:
33.2
thyroid gland:
22.0
EPPK1
ENSSSCG00000032203
ENSG00000261150
Epiplakin 1
Tissue enhanced
Detected in many
skin:
53.9
stomach:
50.8
EPS8L2
ENSSSCG00000012848
ENSG00000177106
EPS8 like 2
Tissue enhanced
Detected in many
stomach:
77.6
ESRP1
ENSSSCG00000006099
ENSG00000104413
Epithelial splicing regulatory protein 1
Tissue enhanced
Detected in many
skin:
44.4
ESRP2
ENSSSCG00000035227
ENSG00000103067
Epithelial splicing regulatory protein 2
Tissue enhanced
Detected in many
liver:
69.2
thyroid gland:
45.3
ETV4
ENSSSCG00000017379
ENSG00000175832
ETS variant 4
Tissue enhanced
Detected in many
cartilage:
59.6
EVPL
ENSSSCG00000017192
ENSG00000167880
Envoplakin
Tissue enhanced
Detected in many
cornea:
52.6
mouth:
25.1
stomach:
28.1
EXPH5
ENSSSCG00000015010
ENSG00000110723
Exophilin 5
Tissue enhanced
Detected in many
liver:
32.8
skin:
45.3
F2RL1
ENSSSCG00000014091
ENSG00000164251
F2R like trypsin receptor 1
Tissue enhanced
Detected in many
large intestine:
23.6
F7
ENSSSCG00000029503
ENSG00000057593
Coagulation factor VII precursor
Tissue enriched
Detected in many
liver:
44.1
FAM110A
ENSSSCG00000007200
ENSG00000125898
Family with sequence similarity 110 member A
Tissue enhanced
Detected in many
cornea:
26.5
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