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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
Musculoskeletal diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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253 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MUC6
ENSSSCG00000012835
ENSG00000184956
Mucin 6, oligomeric mucus/gel-forming
Tissue enriched
Detected in some
small intestine:
996.3
MXD1
ENSSSCG00000008334
ENSG00000059728
MAX dimerization protein 1
Tissue enhanced
Detected in all
large intestine:
47.3
lens:
86.4
MYO1A
ENSSSCG00000000413
ENSG00000166866
Myosin IA
Group enriched
Detected in some
large intestine:
48.4
small intestine:
84.4
stomach:
26.2
MYO7B
ENSSSCG00000015864
ENSG00000169994
Myosin VIIB
Group enriched
Detected in some
large intestine:
60.4
small intestine:
45.6
na
ENSSSCG00000000777
Tissue enhanced
Detected in some
large intestine:
3.4
liver:
3.3
na
ENSSSCG00000001441
Group enriched
Detected in some
gallbladder:
9.8
small intestine:
38.7
stomach:
30.3
na
ENSSSCG00000001734
ENSG00000197261
Group enriched
Detected in many
adipose tissue:
8.4
large intestine:
17.9
small intestine:
28.8
stomach:
22.0
na
ENSSSCG00000003011
Tissue enriched
Detected in some
large intestine:
181.3
na
ENSSSCG00000003047
Tissue enriched
Detected in some
large intestine:
291.6
na
ENSSSCG00000003080
ENSG00000216588
Tissue enhanced
Detected in some
large intestine:
16.8
ovary:
33.9
small intestine:
27.1
na
ENSSSCG00000003225
ENSG00000213822
Tissue enhanced
Detected in many
large intestine:
15.4
small intestine:
38.8
na
ENSSSCG00000005101
High mobility group protein HMGI-C
Group enriched
Detected in some
ovary:
4.9
stomach:
5.2
testis:
3.2
na
ENSSSCG00000005282
Low tissue specificity
Detected in all
na
ENSSSCG00000006409
Group enriched
Detected in some
large intestine:
123.2
small intestine:
66.4
na
ENSSSCG00000006716
Group enriched
Detected in some
large intestine:
51.6
liver:
16.0
na
ENSSSCG00000006792
Tissue enriched
Detected in single
stomach:
210.9
na
ENSSSCG00000006804
Tissue enriched
Detected in single
stomach:
53.1
na
ENSSSCG00000007304
Group enriched
Detected in some
stomach:
41.6
urinary bladder:
12.4
na
ENSSSCG00000009498
Tissue enhanced
Detected in some
large intestine:
17.5
lymphoid tissue:
7.5
small intestine:
24.0
na
ENSSSCG00000010792
ENSG00000165828
Group enriched
Detected in many
large intestine:
22.3
small intestine:
61.5
na
ENSSSCG00000011185
Tissue enhanced
Detected in some
large intestine:
5.2
stomach:
6.0
na
ENSSSCG00000013530
ENSG00000130383,ENSG00000156413,ENSG00000171124
Tissue enriched
Detected in some
large intestine:
51.4
na
ENSSSCG00000015390
ENSG00000085563
ATP-binding cassette, sub-family B (MDR/TAP), member 1
Group enriched
Detected in many
adrenal gland:
120.4
ovary:
77.4
na
ENSSSCG00000016284
Tissue enriched
Detected in all
small intestine:
90.6
na
ENSSSCG00000021018
ENSG00000073605
Group enriched
Detected in some
large intestine:
21.9
small intestine:
27.6
na
ENSSSCG00000024914
ENSG00000243649
Complement factor B precursor
Tissue enhanced
Detected in many
liver:
148.2
small intestine:
99.1
na
ENSSSCG00000025515
Group enriched
Detected in some
heart:
5.8
large intestine:
7.0
small intestine:
7.1
na
ENSSSCG00000025885
ENSG00000179914
Intelectin-2-like precursor
Group enriched
Detected in many
large intestine:
26.7
small intestine:
21.6
upper respiratory system:
77.6
na
ENSSSCG00000027118
Tissue enhanced
Detected in all
epididymis:
64.9
small intestine:
24.1
na
ENSSSCG00000027137
Tissue enhanced
Detected in many
large intestine:
19.4
na
ENSSSCG00000028518
Tissue enhanced
Detected in many
large intestine:
8.2
small intestine:
13.6
na
ENSSSCG00000028871
ENSG00000121552
Cystatin-A8
Tissue enhanced
Detected in all
bone marrow:
21.2
dura mater:
22.7
stomach:
30.6
na
ENSSSCG00000029043
ENSG00000204361
Tissue enhanced
Detected in all
large intestine:
47.7
na
ENSSSCG00000030901
Tissue enhanced
Detected in some
gallbladder:
6.8
small intestine:
33.0
stomach:
20.3
na
ENSSSCG00000031542
Tissue enriched
Detected in some
large intestine:
26.7
na
ENSSSCG00000032026
Tissue enhanced
Detected in many
large intestine:
13.5
small intestine:
17.9
na
ENSSSCG00000032113
Low tissue specificity
Detected in all
na
ENSSSCG00000032239
Low tissue specificity
Detected in all
na
ENSSSCG00000032414
Tissue enhanced
Detected in some
large intestine:
6.1
small intestine:
3.3
stomach:
8.0
na
ENSSSCG00000032666
ENSG00000124226
Group enriched
Detected in some
stomach:
26.7
thyroid gland:
15.2
na
ENSSSCG00000033505
ENSG00000165066
Group enriched
Detected in some
small intestine:
29.5
stomach:
87.5
na
ENSSSCG00000033570
Tissue enhanced
Detected in many
liver:
29.4
stomach:
39.8
na
ENSSSCG00000033677
Tissue enhanced
Detected in many
liver:
34.1
stomach:
40.1
na
ENSSSCG00000034198
Tissue enhanced
Detected in some
gallbladder:
8.9
large intestine:
21.4
small intestine:
19.5
stomach:
12.5
na
ENSSSCG00000034442
Tissue enhanced
Detected in all
large intestine:
38.7
liver:
61.3
male glands:
41.6
na
ENSSSCG00000034515
Group enriched
Detected in many
large intestine:
59.1
small intestine:
23.7
na
ENSSSCG00000034693
Tissue enhanced
Detected in many
large intestine:
7.1
stomach:
17.4
na
ENSSSCG00000034731
ENSG00000160182
Tissue enriched
Detected in many
stomach:
396.2
na
ENSSSCG00000034755
Tissue enhanced
Detected in many
esophagus:
10.9
na
ENSSSCG00000035053
Elafin precursor
Tissue enriched
Detected in some
large intestine:
423.1
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