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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
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Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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253 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ENTPD8
ENSSSCG00000005852
ENSG00000188833
Ectonucleoside triphosphate diphosphohydrolase 8
Tissue enhanced
Detected in many
large intestine:
17.8
small intestine:
17.9
stomach:
17.7
EPHB2
ENSSSCG00000003527
ENSG00000133216
EPH receptor B2
Tissue enhanced
Detected in many
large intestine:
32.1
stomach:
21.6
EPS8L3
ENSSSCG00000006820
ENSG00000198758
EPS8 like 3
Group enriched
Detected in all
gallbladder:
17.0
large intestine:
29.0
small intestine:
47.0
stomach:
19.6
ETHE1
ENSSSCG00000003064
ENSG00000105755
ETHE1, persulfide dioxygenase
Tissue enriched
Detected in all
large intestine:
109.6
ETV7
ENSSSCG00000001561
ENSG00000010030
ETS variant 7
Tissue enhanced
Detected in many
male glands:
35.5
small intestine:
23.0
stomach:
29.7
FABP1
ENSSSCG00000008214
ENSG00000163586
Fatty acid-binding protein, liver
Group enriched
Detected in some
large intestine:
142.2
liver:
42.4
small intestine:
42.3
FBP2
ENSSSCG00000010947
ENSG00000130957
Fructose-1,6-bisphosphatase isozyme 2
Group enriched
Detected in some
large intestine:
31.5
skeletal muscle:
90.0
FER1L6
ENSSSCG00000033333
ENSG00000214814
Fer-1 like family member 6
Tissue enriched
Detected in many
stomach:
67.7
FEV
ENSSSCG00000035988
ENSG00000163497
FEV, ETS transcription factor
Tissue enhanced
Detected in some
brain:
11.0
lens:
11.7
stomach:
5.4
FFAR3
ENSSSCG00000002891
ENSG00000126251,ENSG00000185897
Sus scrofa free fatty acid receptor 3 (FFAR3), mRNA.
Tissue enhanced
Detected in some
gallbladder:
5.3
liver:
4.6
stomach:
4.4
testis:
4.1
FOXA3
ENSSSCG00000003092
ENSG00000170608
Forkhead box A3
Tissue enhanced
Detected in many
liver:
24.1
stomach:
34.0
FOXF2
ENSSSCG00000037195
ENSG00000137273
Forkhead box F2
Tissue enhanced
Detected in many
gallbladder:
32.8
smooth muscle:
23.8
urinary bladder:
17.5
GALNT8
ENSSSCG00000000718
ENSG00000130035
Polypeptide N-acetylgalactosaminyltransferase 8
Tissue enriched
Detected in some
epididymis:
92.8
GAST
ENSSSCG00000021910
ENSG00000184502
Gastrin precursor
Tissue enriched
Detected in single
stomach:
127.6
GCG
ENSSSCG00000015895
ENSG00000115263
Glucagon Glicentin Glicentin-related polypeptide Oxyntomodulin Glucagon Glucagon-like peptide 1 Glucagon-like peptide 1(7-37) Glucagon-like peptide 1(7-36) Glucagon-like peptide 2
Tissue enhanced
Detected in some
brain:
7.9
large intestine:
31.2
small intestine:
7.2
vagus nerve:
9.5
GHRL
ENSSSCG00000011568
ENSG00000157017
Appetite-regulating hormone precursor
Tissue enriched
Detected in some
stomach:
70.6
GKN1
ENSSSCG00000035529
ENSG00000169605
Gastrokine-1
Tissue enriched
Detected in single
stomach:
603.0
GKN2
ENSSSCG00000038802
ENSG00000183607
Gastrokine-2 precursor
Tissue enriched
Detected in single
stomach:
380.5
GKN3
ENSSSCG00000037028
Gastrokine-3 precursor
Tissue enriched
Detected in some
small intestine:
705.8
GNRH1
ENSSSCG00000009651
ENSG00000147437
Progonadoliberin-1 Gonadoliberin-1 GnRH-associated peptide 1
Tissue enriched
Detected in many
brain:
42.5
GOLT1A
ENSSSCG00000015279
ENSG00000174567
Golgi transport 1A
Group enriched
Detected in some
large intestine:
6.8
liver:
11.1
small intestine:
15.1
stomach:
4.5
GPR160
ENSSSCG00000035883
ENSG00000173890
G protein-coupled receptor 160
Tissue enhanced
Detected in many
large intestine:
20.6
lens:
69.3
GUCA2A
ENSSSCG00000003969
ENSG00000197273
Guanylin
Group enriched
Detected in some
large intestine:
187.3
small intestine:
89.4
GUCA2B
ENSSSCG00000003970
ENSG00000044012
Guanylate cyclase activator 2B Uroguanylin
Group enriched
Detected in some
large intestine:
161.2
small intestine:
58.5
HEPH
ENSSSCG00000012363
ENSG00000089472
Hephaestin
Group enriched
Detected in some
large intestine:
30.8
pituitary gland:
10.2
small intestine:
19.9
HMGCS2
ENSSSCG00000036808
ENSG00000134240
Hydroxymethylglutaryl-CoA synthase, mitochondrial
Tissue enriched
Detected in all
large intestine:
116.1
HMX3
ENSSSCG00000010724
ENSG00000188620
H6 family homeobox 3
Group enriched
Detected in some
brain:
12.1
large intestine:
3.7
small intestine:
4.2
stomach:
12.2
HNF1A
ENSSSCG00000009919
ENSG00000135100
Hepatocyte nuclear factor 1-alpha
Tissue enhanced
Detected in some
kidney:
44.0
liver:
42.4
small intestine:
18.9
stomach:
31.4
HNF4A
ENSSSCG00000007371
ENSG00000101076
Hepatocyte nuclear factor 4-alpha
Tissue enhanced
Detected in some
kidney:
56.6
large intestine:
36.1
liver:
68.3
small intestine:
31.8
stomach:
61.7
HNF4G
ENSSSCG00000034242
ENSG00000164749
Hepatocyte nuclear factor 4 gamma
Group enriched
Detected in some
large intestine:
44.1
small intestine:
52.4
HOXB13
ENSSSCG00000017541
ENSG00000159184
Homeobox B13
Group enriched
Detected in some
large intestine:
46.2
male glands:
70.8
HOXB9
ENSSSCG00000039193
ENSG00000170689
Homeobox B9
Tissue enhanced
Detected in some
epididymis:
24.0
kidney:
24.0
large intestine:
28.2
male glands:
20.6
HTR4
ENSSSCG00000014428
ENSG00000164270
5-hydroxytryptamine receptor 4
Tissue enhanced
Detected in many
epididymis:
23.1
lens:
25.9
small intestine:
32.0
testis:
33.2
IFNK
ENSSSCG00000011011
ENSG00000147896
Interferon kappa
Low tissue specificity
Detected in many
IHH
ENSSSCG00000016204
ENSG00000163501
Indian hedgehog protein precursor
Tissue enhanced
Detected in all
gallbladder:
28.2
large intestine:
31.5
stomach:
38.3
INSL5
ENSSSCG00000031956
ENSG00000172410
Insulin like 5
Tissue enriched
Detected in some
large intestine:
29.2
ISX
ENSSSCG00000040934
ENSG00000175329
Intestine specific homeobox
Group enriched
Detected in some
large intestine:
42.2
small intestine:
19.2
KRT20
ENSSSCG00000017459
ENSG00000171431
Keratin 20
Tissue enhanced
Detected in many
gallbladder:
36.3
large intestine:
157.2
small intestine:
66.8
LCORL
ENSSSCG00000008748
ENSG00000178177
Ligand-dependent nuclear receptor corepressor-like protein
Low tissue specificity
Detected in all
LGALS2
ENSSSCG00000021728
ENSG00000100079
Galectin-2
Tissue enriched
Detected in some
gallbladder:
273.1
LGALS4
ENSSSCG00000022017
ENSG00000171747
Galectin-4
Tissue enhanced
Detected in some
large intestine:
131.5
mouth:
193.3
small intestine:
49.3
stomach:
77.7
LRRC19
ENSSSCG00000005125
ENSG00000184434
Leucine rich repeat containing 19
Tissue enhanced
Detected in all
large intestine:
21.4
LYPD8
ENSSSCG00000013973
ENSG00000259823
LY6/PLAUR domain containing 8
Group enriched
Detected in some
large intestine:
106.4
small intestine:
68.3
MEP1B
ENSSSCG00000003732
ENSG00000141434
Meprin A subunit beta
Tissue enhanced
Detected in some
kidney:
14.4
small intestine:
35.5
MGAM2
ENSSSCG00000016487
ENSG00000257743
Maltase-glucoamylase 2 (putative)
Group enriched
Detected in many
large intestine:
42.9
small intestine:
31.3
upper respiratory system:
32.8
MIER3
ENSSSCG00000016920
ENSG00000155545
MIER family member 3
Low tissue specificity
Detected in all
MMP3
ENSSSCG00000014985
ENSG00000149968
Interstitial collagenase 18 kDa interstitial collagenase
Tissue enhanced
Detected in many
small intestine:
36.8
upper respiratory system:
34.7
urinary bladder:
43.0
MNX1
ENSSSCG00000016410
ENSG00000130675
Motor neuron and pancreas homeobox 1
Group enriched
Detected in some
brain:
7.3
large intestine:
8.7
small intestine:
12.0
stomach:
9.7
MS4A12
ENSSSCG00000027387
ENSG00000071203
Membrane spanning 4-domains A12
Group enriched
Detected in some
large intestine:
71.9
small intestine:
24.1
MUC13
ENSSSCG00000011862
ENSG00000173702
Mucin-13
Tissue enhanced
Detected in some
large intestine:
47.1
liver:
28.6
small intestine:
158.3
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