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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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570 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLEKHA5
ENSSSCG00000000588
ENSG00000052126
Pleckstrin homology domain containing A5
Low tissue specificity
Detected in all
PLEKHG5
ENSSSCG00000003376
ENSG00000171680
Pleckstrin homology and RhoGEF domain containing G5
Tissue enhanced
Detected in all
vagus nerve:
45.9
PLEKHM2
ENSSSCG00000003468
ENSG00000116786
Pleckstrin homology and RUN domain containing M2
Low tissue specificity
Detected in all
PLK2
ENSSSCG00000016925
ENSG00000145632
Polo like kinase 2
Tissue enhanced
Detected in many
bone marrow:
52.6
PLXNA2
ENSSSCG00000026412
ENSG00000076356
Plexin A2
Low tissue specificity
Detected in many
PLXNC1
ENSSSCG00000000907
ENSG00000136040
Plexin C1
Tissue enhanced
Detected in many
cervix:
35.6
lymphoid tissue:
45.6
PMS2
ENSSSCG00000007590
ENSG00000122512
PMS1 homolog 2, mismatch repair system component
Low tissue specificity
Detected in all
PNKD
ENSSSCG00000029002
ENSG00000127838
Paroxysmal nonkinesigenic dyskinesia
Low tissue specificity
Detected in all
PNPLA6
ENSSSCG00000013572
ENSG00000032444
Patatin like phospholipase domain containing 6
Low tissue specificity
Detected in all
PPM1F
ENSSSCG00000010079
ENSG00000100034
Protein phosphatase, Mg2+/Mn2+ dependent 1F
Low tissue specificity
Detected in all
PPM1H
ENSSSCG00000036751
ENSG00000111110
Protein phosphatase, Mg2+/Mn2+ dependent 1H
Low tissue specificity
Detected in all
PPP1R26
ENSSSCG00000005761
ENSG00000196422
Protein phosphatase 1 regulatory subunit 26
Low tissue specificity
Detected in all
PPP1R9B
ENSSSCG00000017584
ENSG00000108819
Protein phosphatase 1 regulatory subunit 9B
Tissue enhanced
Detected in all
brain:
63.1
PPP2R5C
ENSSSCG00000002540
ENSG00000078304
Protein phosphatase 2 regulatory subunit B'gamma
Low tissue specificity
Detected in all
PPP5C
ENSSSCG00000003098
ENSG00000011485
Protein phosphatase 5 catalytic subunit
Low tissue specificity
Detected in all
PPY
ENSSSCG00000017368
ENSG00000108849
Pancreatic polypeptide
Group enriched
Detected in some
epididymis:
13.9
pineal gland:
21.9
PRCP
ENSSSCG00000014899
ENSG00000137509
Prolylcarboxypeptidase
Low tissue specificity
Detected in all
PREX1
ENSSSCG00000031118
ENSG00000124126
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1
Tissue enhanced
Detected in all
cartilage:
38.9
lymphoid tissue:
37.3
PRR36
ENSSSCG00000013584
ENSG00000183248
Proline rich 36
Tissue enhanced
Detected in many
brain:
20.9
fallopian tube:
18.8
PRRC2B
ENSSSCG00000005715
ENSG00000130723
Proline rich coiled-coil 2B
Low tissue specificity
Detected in all
PSCA
ENSSSCG00000035372
ENSG00000167653
Prostate stem cell antigen
Tissue enriched
Detected in some
stomach:
478.2
PTK2B
ENSSSCG00000009664
ENSG00000120899
Protein tyrosine kinase 2 beta
Tissue enhanced
Detected in many
brain:
63.3
PXYLP1
ENSSSCG00000011670
ENSG00000155893
2-phosphoxylose phosphatase 1
Tissue enriched
Detected in all
cartilage:
103.9
PYCR3
ENSSSCG00000032763
ENSG00000104524
Pyrroline-5-carboxylate reductase 3
Low tissue specificity
Detected in all
RAB11FIP3
ENSSSCG00000035854
ENSG00000090565
RAB11 family interacting protein 3
Tissue enhanced
Detected in all
kidney:
45.8
RAB15
ENSSSCG00000002280
ENSG00000139998
RAB15, member RAS oncogene family
Tissue enriched
Detected in many
lens:
89.5
RAB26
ENSSSCG00000033691
ENSG00000167964
RAB26, member RAS oncogene family
Low tissue specificity
Detected in all
RAB27B
ENSSSCG00000035243
ENSG00000041353
RAB27B, member RAS oncogene family
Tissue enhanced
Detected in many
male glands:
114.3
salivary gland:
34.9
RAB31
ENSSSCG00000037264
ENSG00000168461
RAB31, member RAS oncogene family
Low tissue specificity
Detected in many
RABGGTA
ENSSSCG00000001992
ENSG00000100949
Geranylgeranyl transferase type-2 subunit alpha
Low tissue specificity
Detected in many
RADIL
ENSSSCG00000007575
ENSG00000157927
Rap associating with DIL domain
Tissue enhanced
Detected in many
epididymis:
42.6
RANGAP1
ENSSSCG00000028202
ENSG00000100401
Ran GTPase activating protein 1
Tissue enhanced
Detected in all
testis:
54.9
RAP2B
ENSSSCG00000038366
ENSG00000181467
Ras-related protein Rap-2a
Low tissue specificity
Detected in all
RAPGEF2
ENSSSCG00000008881
ENSG00000109756
Rap guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
RAPGEFL1
ENSSSCG00000017478
ENSG00000108352
Rap guanine nucleotide exchange factor like 1
Tissue enhanced
Detected in many
skin:
35.7
stomach:
57.6
RASAL1
ENSSSCG00000009874
ENSG00000111344
RAS protein activator like 1
Tissue enhanced
Detected in many
adrenal gland:
30.1
salivary gland:
46.4
RASAL2
ENSSSCG00000015519
ENSG00000075391
RAS protein activator like 2
Low tissue specificity
Detected in all
RASGRF2
ENSSSCG00000014127
ENSG00000113319
Ras protein specific guanine nucleotide releasing factor 2
Tissue enhanced
Detected in many
brain:
46.6
RASSF2
ENSSSCG00000032601
ENSG00000101265
Ras association domain family member 2
Tissue enhanced
Detected in all
dura mater:
59.9
RBFOX2
ENSSSCG00000000152
ENSG00000100320
RNA binding protein fox-1 homolog 2
Low tissue specificity
Detected in all
RDH13
ENSSSCG00000038287
ENSG00000160439
Retinol dehydrogenase 13
Low tissue specificity
Detected in all
RELT
ENSSSCG00000014825
ENSG00000054967
RELT, TNF receptor
Tissue enhanced
Detected in many
lymphoid tissue:
28.3
RETREG2
ENSSSCG00000016207
ENSG00000144567
Reticulophagy regulator family member 2
Low tissue specificity
Detected in all
REV1
ENSSSCG00000008179
ENSG00000135945
REV1, DNA directed polymerase
Low tissue specificity
Detected in all
RFLNA
ENSSSCG00000035760
ENSG00000178882
Refilin A
Tissue enhanced
Detected in many
ovary:
45.6
stomach:
91.4
RGS10
ENSSSCG00000039838
ENSG00000148908
Regulator of G protein signaling 10
Tissue enhanced
Detected in many
lymphoid tissue:
28.8
RHPN2
ENSSSCG00000022312
ENSG00000131941
Rhophilin Rho GTPase binding protein 2
Tissue enhanced
Detected in many
male glands:
38.5
RIC3
ENSSSCG00000014580
ENSG00000166405
RIC3 acetylcholine receptor chaperone
Low tissue specificity
Detected in all
RIPOR2
ENSSSCG00000001097
ENSG00000111913
RHO family interacting cell polarization regulator 2
Tissue enhanced
Detected in many
lymphoid tissue:
61.4
RMC1
ENSSSCG00000026851
ENSG00000141452
Regulator of MON1-CCZ1
Low tissue specificity
Detected in all
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