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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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570 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RNASE13
ENSSSCG00000023519
ENSG00000206150
Ribonuclease A family member 13 (inactive)
Tissue enriched
Detected in some
epididymis:
83.0
RND3
ENSSSCG00000040445
ENSG00000115963
Rho-related GTP-binding protein RhoE precursor
Low tissue specificity
Detected in all
RNF150
ENSSSCG00000009053
ENSG00000170153
Ring finger protein 150
Tissue enhanced
Detected in many
large intestine:
42.4
RNF6
ENSSSCG00000024064
ENSG00000127870
Ring finger protein 6
Tissue enhanced
Detected in all
testis:
48.2
ROGDI
ENSSSCG00000007932
ENSG00000067836
Rogdi homolog
Tissue enhanced
Detected in all
stomach:
66.7
RUBCN
ENSSSCG00000011853
ENSG00000145016
Run domain Beclin-1-interacting and cysteine-rich domain-containing protein
Low tissue specificity
Detected in all
RUNDC1
ENSSSCG00000035057
ENSG00000198863
RUN domain containing 1
Low tissue specificity
Detected in all
SAL1
ENSSSCG00000005474
Salivary lipocalin precursor
Tissue enriched
Detected in some
salivary gland:
3149.4
SAMD10
ENSSSCG00000034186
ENSG00000130590
Sterile alpha motif domain containing 10
Tissue enhanced
Detected in many
male glands:
24.0
SAPCD2
ENSSSCG00000032279
ENSG00000186193
Suppressor APC domain containing 2
Tissue enhanced
Detected in some
large intestine:
20.6
skin:
7.7
small intestine:
10.7
SATB1
ENSSSCG00000011201
ENSG00000182568
SATB homeobox 1
Tissue enriched
Detected in many
lymphoid tissue:
199.2
SCFD2
ENSSSCG00000008836
ENSG00000184178
Sec1 family domain containing 2
Low tissue specificity
Detected in all
SDSL
ENSSSCG00000009870
ENSG00000139410
Serine dehydratase like
Group enriched
Detected in some
kidney:
30.7
liver:
62.4
SEMA7A
ENSSSCG00000023165
ENSG00000138623
Semaphorin 7A (John Milton Hagen blood group)
Tissue enhanced
Detected in many
lymphoid tissue:
35.5
ovary:
49.9
SEPT11
ENSSSCG00000008986
ENSG00000138758
Septin 11
Low tissue specificity
Detected in all
SGPP2
ENSSSCG00000025993
ENSG00000163082
Sphingosine-1-phosphate phosphatase 2
Tissue enhanced
Detected in many
male glands:
53.4
SH3RF1
ENSSSCG00000009716
ENSG00000154447
SH3 domain containing ring finger 1
Tissue enhanced
Detected in all
cartilage:
85.0
SH3YL1
ENSSSCG00000023273
ENSG00000035115
SH3 domain-containing YSC84-like protein 1
Tissue enhanced
Detected in many
male glands:
53.6
SHANK2
ENSSSCG00000033043
ENSG00000162105
SH3 and multiple ankyrin repeat domains 2
Tissue enhanced
Detected in many
male glands:
66.4
salivary gland:
69.2
SHANK3
ENSSSCG00000031925
ENSG00000251322
SH3 and multiple ankyrin repeat domains 3
Low tissue specificity
Detected in all
SHTN1
ENSSSCG00000010665
ENSG00000187164
Shootin 1
Tissue enhanced
Detected in many
brain:
83.8
SIDT1
ENSSSCG00000024429
ENSG00000072858
SID1 transmembrane family member 1
Tissue enhanced
Detected in many
stomach:
25.8
SIN3B
ENSSSCG00000013867
ENSG00000127511
SIN3 transcription regulator family member B
Low tissue specificity
Detected in all
SLC10A6
ENSSSCG00000028952
ENSG00000145283
Solute carrier family 10 member 6
Tissue enhanced
Detected in many
mouth:
27.1
skin:
30.3
SLC15A2
ENSSSCG00000030305
ENSG00000163406
Solute carrier family 15 member 2
Tissue enhanced
Detected in many
lymphoid tissue:
37.7
SLC16A14
ENSSSCG00000016260
ENSG00000163053
Solute carrier family 16 member 14
Low tissue specificity
Detected in many
SLC19A3
ENSSSCG00000021968
ENSG00000135917
Solute carrier family 19 member 3
Tissue enhanced
Detected in many
kidney:
28.0
small intestine:
15.2
SLC22A23
ENSSSCG00000001004
ENSG00000137266
Solute carrier family 22 member 23
Tissue enhanced
Detected in many
stomach:
63.5
upper respiratory system:
42.8
SLC25A53
ENSSSCG00000012540
ENSG00000269743
Solute carrier family 25 member 53
Tissue enhanced
Detected in many
brain:
6.3
lymphoid tissue:
9.0
SLC35E2B
ENSSSCG00000003353
ENSG00000189339
Solute carrier family 35 member E2B
Tissue enhanced
Detected in all
liver:
48.9
SLC36A1
ENSSSCG00000035442
ENSG00000123643
Solute carrier family 36 member 1
Tissue enhanced
Detected in all
brain:
47.3
SLC38A7
ENSSSCG00000040881
ENSG00000103042
Solute carrier family 38 member 7
Low tissue specificity
Detected in all
SLC52A3
ENSSSCG00000007199
ENSG00000101276
Solute carrier family 52 member 3
Tissue enhanced
Detected in all
male glands:
43.8
SLC6A20
ENSSSCG00000028643
ENSG00000163817
Solute carrier family 6 member 20
Tissue enhanced
Detected in all
brain:
42.0
choroid plexus:
64.0
SLC7A1
ENSSSCG00000029456
ENSG00000139514
High affinity cationic amino acid transporter 1
Tissue enhanced
Detected in many
cartilage:
40.4
skin:
41.9
SLC7A5
ENSSSCG00000032996
ENSG00000103257
Solute carrier family 7 member 5
Tissue enhanced
Detected in many
lens:
41.8
male glands:
144.5
SLC9A9
ENSSSCG00000011686
ENSG00000181804
Solute carrier family 9 member A9
Low tissue specificity
Detected in all
SLCO2B1
ENSSSCG00000014851
ENSG00000137491
Solute carrier organic anion transporter family member 2B1
Tissue enhanced
Detected in many
liver:
74.6
SMARCA2
ENSSSCG00000005232
ENSG00000080503
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Low tissue specificity
Detected in all
SNX19
ENSSSCG00000015252
ENSG00000120451
Sorting nexin 19
Low tissue specificity
Detected in all
SNX25
ENSSSCG00000015789
ENSG00000109762
Sorting nexin 25
Tissue enhanced
Detected in all
thyroid gland:
45.1
SNX30
ENSSSCG00000005471
ENSG00000148158
Sorting nexin family member 30
Low tissue specificity
Detected in all
SOCS7
ENSSSCG00000018057
ENSG00000274211
Suppressor of cytokine signaling 7
Low tissue specificity
Detected in all
SORBS2
ENSSSCG00000036679
ENSG00000154556
Sorbin and SH3 domain containing 2
Tissue enhanced
Detected in many
smooth muscle:
100.7
SORL1
ENSSSCG00000015135
ENSG00000137642
Sortilin related receptor 1
Low tissue specificity
Detected in many
SPATA2L
ENSSSCG00000029339
ENSG00000158792
Spermatogenesis-associated protein 2-like protein
Low tissue specificity
Detected in all
SPI1
ENSSSCG00000013237
ENSG00000066336
Transcription factor PU.1
Tissue enhanced
Detected in many
lung:
52.3
SPIRE2
ENSSSCG00000002635
ENSG00000204991
Spire type actin nucleation factor 2
Tissue enhanced
Detected in many
stomach:
42.1
SPOCD1
ENSSSCG00000003606
ENSG00000134668
SPOC domain containing 1
Tissue enhanced
Detected in some
adipose tissue:
2.6
lymphoid tissue:
2.3
testis:
2.6
SPTBN2
ENSSSCG00000038508
ENSG00000173898
Spectrin beta, non-erythrocytic 2
Tissue enhanced
Detected in many
brain:
35.5
cornea:
32.4
testis:
42.8
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