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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
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570 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000038792
ENSG00000188732
Tissue enhanced
Detected in many
epididymis:
24.0
male glands:
21.5
testis:
42.3
na
ENSSSCG00000039500
ENSG00000099866
Mucosal addressin cell adhesion molecule 1 precursor
Tissue enhanced
Detected in many
large intestine:
14.1
lymphoid tissue:
30.2
small intestine:
13.3
na
ENSSSCG00000040535
ENSG00000160932
Tissue enhanced
Detected in many
lymphoid tissue:
57.0
na
ENSSSCG00000040909
Tissue enhanced
Detected in many
brain:
35.5
male glands:
25.2
stomach:
30.6
NCF1
ENSSSCG00000007722
ENSG00000158517
Neutrophil cytosol factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
34.1
NECTIN1
ENSSSCG00000015125
ENSG00000110400
Nectin-1 precursor
Tissue enhanced
Detected in many
skin:
34.6
urinary bladder:
38.1
NEK3
ENSSSCG00000009379
ENSG00000136098
NIMA related kinase 3
Low tissue specificity
Detected in all
NEU2
ENSSSCG00000016297
ENSG00000115488
Neuraminidase 2
Tissue enhanced
Detected in some
ductus deferens:
6.8
salivary gland:
8.0
skin:
12.2
NEURL4
ENSSSCG00000017941
ENSG00000215041
Neuralized E3 ubiquitin protein ligase 4
Low tissue specificity
Detected in all
NF2
ENSSSCG00000028707
ENSG00000186575
Neurofibromin 2
Low tissue specificity
Detected in all
NKX1-2
ENSSSCG00000010733
ENSG00000229544
NK1 homeobox 2
Tissue enhanced
Detected in some
epididymis:
5.3
liver:
3.9
lymphoid tissue:
3.3
male glands:
3.3
small intestine:
5.1
NLRP3
ENSSSCG00000013940
ENSG00000162711
NACHT, LRR and PYD domains-containing protein 3
Low tissue specificity
Detected in all
NPAS2
ENSSSCG00000008171
ENSG00000170485
Neuronal PAS domain protein 2
Low tissue specificity
Detected in all
NPDC1
ENSSSCG00000034566
ENSG00000107281
Neural proliferation, differentiation and control 1
Low tissue specificity
Detected in many
NPFFR2
ENSSSCG00000008944
ENSG00000056291
Neuropeptide FF receptor 2
Tissue enhanced
Detected in some
brain:
7.6
cornea:
17.6
ovary:
9.0
NPL
ENSSSCG00000022292
ENSG00000135838
N-acetylneuraminate lyase
Tissue enhanced
Detected in many
lymphoid tissue:
26.3
skin:
27.8
NPRL2
ENSSSCG00000011409
ENSG00000114388
NPR2 like, GATOR1 complex subunit
Low tissue specificity
Detected in all
NR1D1
ENSSSCG00000036933
ENSG00000126368
Nuclear receptor subfamily 1 group D member 1
Low tissue specificity
Detected in all
NRARP
ENSSSCG00000005844
ENSG00000198435
NOTCH regulated ankyrin repeat protein
Tissue enhanced
Detected in all
testis:
90.1
urinary bladder:
83.9
NRG2
ENSSSCG00000021082
ENSG00000158458
Neuregulin 2
Low tissue specificity
Detected in many
NSMF
ENSSSCG00000037880
ENSG00000165802
NMDA receptor synaptonuclear signaling and neuronal migration factor
Tissue enhanced
Detected in all
brain:
71.4
NUDCD3
ENSSSCG00000016747
ENSG00000015676
NudC domain containing 3
Low tissue specificity
Detected in all
ODF2L
ENSSSCG00000006936
ENSG00000122417
Outer dense fiber of sperm tails 2 like
Low tissue specificity
Detected in all
ONECUT2
ENSSSCG00000004540
ENSG00000119547
One cut homeobox 2
Group enriched
Detected in some
gallbladder:
43.1
liver:
30.0
small intestine:
40.5
ONECUT3
ENSSSCG00000013439
ENSG00000205922
One cut homeobox 3
Tissue enhanced
Detected in some
brain:
3.5
retina:
4.8
stomach:
8.4
OPHN1
ENSSSCG00000022676
ENSG00000079482
Oligophrenin 1
Low tissue specificity
Detected in all
OTOA
ENSSSCG00000007838
ENSG00000155719
Otoancorin
Tissue enhanced
Detected in some
urinary bladder:
11.5
OTUD3
ENSSSCG00000039652
ENSG00000169914
OTU deubiquitinase 3
Low tissue specificity
Detected in all
P2RY13
ENSSSCG00000032162
ENSG00000181631
Purinergic receptor P2Y13
Tissue enhanced
Detected in many
choroid plexus:
13.6
lymphoid tissue:
29.5
P2RY14
ENSSSCG00000011712
ENSG00000174944
Purinergic receptor P2Y14
Tissue enhanced
Detected in all
choroid plexus:
37.0
small intestine:
33.1
P2RY6
ENSSSCG00000014823
ENSG00000171631
P2Y purinoceptor 6
Tissue enhanced
Detected in many
ovary:
12.5
PARD6B
ENSSSCG00000027206
ENSG00000124171
Partitioning defective 6 homolog beta
Low tissue specificity
Detected in many
PCDH1
ENSSSCG00000022289
ENSG00000156453
Protocadherin 1
Low tissue specificity
Detected in many
PDE2A
ENSSSCG00000029388
ENSG00000186642
Phosphodiesterase 2A
Tissue enhanced
Detected in many
brain:
54.7
PDE4A
ENSSSCG00000013642
ENSG00000065989
CAMP-specific 3',5'-cyclic phosphodiesterase 4A
Tissue enhanced
Detected in many
male glands:
60.9
skeletal muscle:
47.4
PDE7A
ENSSSCG00000006218
ENSG00000205268
Phosphodiesterase 7A
Tissue enhanced
Detected in all
cartilage:
51.4
PDZD2
ENSSSCG00000016810
ENSG00000133401
PDZ domain containing 2
Low tissue specificity
Detected in all
PEX6
ENSSSCG00000001653
ENSG00000124587
Peroxisome biogenesis factor 6
Low tissue specificity
Detected in all
PI4KA
ENSSSCG00000010092
ENSG00000241973
Phosphatidylinositol 4-kinase alpha
Low tissue specificity
Detected in all
PIDD1
ENSSSCG00000012843
ENSG00000177595
P53-induced death domain protein 1
Low tissue specificity
Detected in all
PIK3CG
ENSSSCG00000027272
ENSG00000105851
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
Tissue enhanced
Detected in many
lymphoid tissue:
27.6
PIRT
ENSSSCG00000037179
ENSG00000233670
Phosphoinositide interacting regulator of transient receptor potential channels
Tissue enriched
Detected in some
stomach:
38.5
PITPNM1
ENSSSCG00000012903
ENSG00000110697
Phosphatidylinositol transfer protein membrane associated 1
Low tissue specificity
Detected in all
PITPNM2
ENSSSCG00000009781
ENSG00000090975
Phosphatidylinositol transfer protein membrane associated 2
Low tissue specificity
Detected in all
PLA2G4A
ENSSSCG00000023351
ENSG00000116711
Phospholipase A2 group IVA
Low tissue specificity
Detected in many
PLCB1
ENSSSCG00000007056
ENSG00000182621
Phospholipase C beta 1
Tissue enhanced
Detected in many
male glands:
57.8
PLCH1
ENSSSCG00000026718
ENSG00000114805
Phospholipase C eta 1
Tissue enhanced
Detected in many
epididymis:
28.2
male glands:
43.3
PLCL2
ENSSSCG00000029811
ENSG00000154822
Phospholipase C like 2
Low tissue specificity
Detected in many
PLD4
ENSSSCG00000002554
ENSG00000166428
Phospholipase D family member 4
Tissue enhanced
Detected in many
lymphoid tissue:
30.6
synovial tissue:
41.7
PLEK
ENSSSCG00000008348
ENSG00000115956
Pleckstrin
Tissue enhanced
Detected in many
lung:
13.0
lymphoid tissue:
19.5
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