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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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570 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GLYR1
ENSSSCG00000007931
ENSG00000140632
Glyoxylate reductase 1 homolog
Low tissue specificity
Detected in all
GNA11
ENSSSCG00000029279
ENSG00000088256
Guanine nucleotide-binding protein subunit alpha-11
Low tissue specificity
Detected in all
GNPTAB
ENSSSCG00000000862
ENSG00000111670
N-acetylglucosamine-1-phosphate transferase alpha and beta subunits
Low tissue specificity
Detected in all
GNPTG
ENSSSCG00000008031
ENSG00000090581
N-acetylglucosamine-1-phosphate transferase gamma subunit
Low tissue specificity
Detected in all
GPATCH4
ENSSSCG00000006481
ENSG00000160818
G patch domain-containing protein 4
Low tissue specificity
Detected in all
GPR107
ENSSSCG00000038868
ENSG00000148358
G protein-coupled receptor 107
Low tissue specificity
Detected in all
GPR137
ENSSSCG00000013032
ENSG00000173264
G protein-coupled receptor 137
Low tissue specificity
Detected in all
GPR68
ENSSSCG00000034114
ENSG00000119714
G protein-coupled receptor 68
Tissue enhanced
Detected in many
ovary:
18.4
GPR84
ENSSSCG00000000291
ENSG00000139572
G-protein coupled receptor 84
Tissue enhanced
Detected in many
dura mater:
11.2
lymphoid tissue:
9.0
upper respiratory system:
10.1
GPRIN3
ENSSSCG00000039821
ENSG00000185477
GPRIN family member 3
Tissue enhanced
Detected in many
brain:
34.2
lymphoid tissue:
35.7
pineal gland:
34.6
GRASP
ENSSSCG00000000234
ENSG00000161835
General receptor for phosphoinositides 1 associated scaffold protein
Low tissue specificity
Detected in many
GREM2
ENSSSCG00000023289
ENSG00000180875
Gremlin 2, DAN family BMP antagonist
Tissue enhanced
Detected in some
penis:
10.8
skin:
13.5
vagus nerve:
11.6
GRIP1
ENSSSCG00000000478
ENSG00000155974
Glutamate receptor interacting protein 1
Low tissue specificity
Detected in many
GRIPAP1
ENSSSCG00000021106
ENSG00000068400
GRIP1 associated protein 1
Low tissue specificity
Detected in all
GRK2
ENSSSCG00000012918
ENSG00000173020
Beta-adrenergic receptor kinase 1
Low tissue specificity
Detected in all
GRK4
ENSSSCG00000008694
ENSG00000125388
G protein-coupled receptor kinase 4
Tissue enriched
Detected in many
testis:
73.1
GRPR
ENSSSCG00000012144
ENSG00000126010
Gastrin-releasing peptide receptor
Low tissue specificity
Detected in all
GRTP1
ENSSSCG00000009554
ENSG00000139835
Growth hormone regulated TBC protein 1
Tissue enhanced
Detected in many
stomach:
40.1
GUCY1A1
ENSSSCG00000008866
ENSG00000164116
Guanylate cyclase soluble subunit alpha-3
Low tissue specificity
Detected in many
HAGHL
ENSSSCG00000008003
ENSG00000103253
Hydroxyacylglutathione hydrolase like
Tissue enhanced
Detected in many
male glands:
18.4
HDAC5
ENSSSCG00000017366
ENSG00000108840
Histone deacetylase 5
Low tissue specificity
Detected in all
HDAC9
ENSSSCG00000015368
ENSG00000048052
Histone deacetylase 9
Tissue enhanced
Detected in all
cartilage:
53.6
HES4
ENSSSCG00000035420
ENSG00000188290
Hes family bHLH transcription factor 4
Low tissue specificity
Detected in all
HIPK2
ENSSSCG00000026733
ENSG00000064393
Homeodomain interacting protein kinase 2
Low tissue specificity
Detected in all
HIVEP2
ENSSSCG00000004138
ENSG00000010818
Human immunodeficiency virus type I enhancer binding protein 2
Tissue enhanced
Detected in all
cartilage:
67.2
HIVEP3
ENSSSCG00000033465
ENSG00000127124
Human immunodeficiency virus type I enhancer binding protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
30.5
HOOK1
ENSSSCG00000003826
ENSG00000134709
Hook microtubule tethering protein 1
Tissue enhanced
Detected in many
pineal gland:
51.2
salivary gland:
64.1
testis:
39.8
HRH1
ENSSSCG00000011576
ENSG00000196639
Histamine receptor H1
Low tissue specificity
Detected in all
HRH2
ENSSSCG00000029096
ENSG00000113749
Histamine receptor H2
Low tissue specificity
Detected in all
HS3ST1
ENSSSCG00000021515
ENSG00000002587
Heparan sulfate-glucosamine 3-sulfotransferase 1
Tissue enhanced
Detected in many
cartilage:
54.1
epididymis:
32.4
HS6ST1
ENSSSCG00000022197
ENSG00000136720
Heparan sulfate 6-O-sulfotransferase 1
Low tissue specificity
Detected in all
HTRA2
ENSSSCG00000039882
ENSG00000115317
HtrA serine peptidase 2
Low tissue specificity
Detected in all
ICA1
ENSSSCG00000015346
ENSG00000003147
Islet cell autoantigen 1
Tissue enhanced
Detected in many
testis:
51.4
IFNAR1
ENSSSCG00000033115
ENSG00000142166
Interferon alpha/beta receptor 1 precursor
Low tissue specificity
Detected in all
IFNGR1
ENSSSCG00000004156
ENSG00000027697
Interferon gamma receptor 1 precursor
Low tissue specificity
Detected in all
IGFBPL1
ENSSSCG00000005360
ENSG00000137142
Insulin like growth factor binding protein like 1
Tissue enhanced
Detected in some
brain:
7.4
lymphoid tissue:
12.8
small intestine:
8.5
upper respiratory system:
5.5
INPP5J
ENSSSCG00000030345
ENSG00000185133
Inositol polyphosphate-5-phosphatase J
Tissue enhanced
Detected in many
brain:
29.6
stomach:
22.1
INTS9
ENSSSCG00000009681
ENSG00000104299
Integrator complex subunit 9
Low tissue specificity
Detected in all
IQSEC2
ENSSSCG00000012324
ENSG00000124313
IQ motif and Sec7 domain 2
Tissue enhanced
Detected in many
brain:
31.6
IRAK2
ENSSSCG00000011570
ENSG00000134070
Interleukin 1 receptor associated kinase 2
Low tissue specificity
Detected in many
ISG15
ENSSSCG00000040575
ENSG00000187608
ISG15 ubiquitin-like modifier
Low tissue specificity
Detected in many
ITGAE
ENSSSCG00000017869
ENSG00000083457
Integrin subunit alpha E
Tissue enhanced
Detected in many
lens:
57.9
lymphoid tissue:
25.9
ITPKA
ENSSSCG00000004746
ENSG00000137825
Inositol-trisphosphate 3-kinase A
Tissue enhanced
Detected in many
brain:
24.6
stomach:
22.0
ITPR1
ENSSSCG00000023437
ENSG00000150995
Inositol 1,4,5-trisphosphate receptor type 1
Tissue enhanced
Detected in all
cervix:
67.1
KCNG3
ENSSSCG00000008465
ENSG00000171126
Potassium voltage-gated channel modifier subfamily G member 3
Tissue enhanced
Detected in many
cornea:
10.3
epididymis:
18.7
male glands:
20.1
KCNK1
ENSSSCG00000010163
ENSG00000135750
Potassium two pore domain channel subfamily K member 1
Tissue enhanced
Detected in many
brain:
63.0
epididymis:
45.4
male glands:
31.4
KCNMA1
ENSSSCG00000010325
ENSG00000156113
Calcium-activated potassium channel subunit alpha-1
Tissue enhanced
Detected in many
cervix:
87.5
pineal gland:
73.5
smooth muscle:
70.9
KIAA0513
ENSSSCG00000002666
ENSG00000135709
KIAA0513
Tissue enhanced
Detected in all
stomach:
69.5
KIAA0930
ENSSSCG00000000018
ENSG00000100364
KIAA0930
Low tissue specificity
Detected in all
KIAA1211L
ENSSSCG00000008187
ENSG00000196872
KIAA1211 like
Tissue enhanced
Detected in many
brain:
34.1
lymphoid tissue:
26.4
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