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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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570 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DOCK10
ENSSSCG00000016237
ENSG00000135905
Dedicator of cytokinesis 10
Tissue enhanced
Detected in all
brain:
44.2
lymphoid tissue:
55.3
DPF1
ENSSSCG00000025160
ENSG00000011332
Double PHD fingers 1
Low tissue specificity
Detected in all
DPH2
ENSSSCG00000036620
ENSG00000132768
DPH2 homolog
Low tissue specificity
Detected in all
DUSP22
ENSSSCG00000031489
ENSG00000112679
Dual specificity phosphatase 22
Low tissue specificity
Detected in all
EDDM3B
ENSSSCG00000021866
ENSG00000181552,ENSG00000181562
Epididymal secretory protein E3-beta precursor
Group enriched
Detected in many
ductus deferens:
54.5
epididymis:
177.7
male glands:
55.5
testis:
77.3
EFNA2
ENSSSCG00000038701
ENSG00000099617
Ephrin A2
Tissue enriched
Detected in many
lymphoid tissue:
27.9
EGLN2
ENSSSCG00000002995
ENSG00000269858
Egl-9 family hypoxia inducible factor 2
Tissue enhanced
Detected in all
testis:
84.3
EGR3
ENSSSCG00000009630
ENSG00000179388
Early growth response 3
Tissue enhanced
Detected in many
synovial tissue:
55.2
EHMT2
ENSSSCG00000001420
ENSG00000204371
Histone-lysine N-methyltransferase EHMT2
Low tissue specificity
Detected in all
ELAC2
ENSSSCG00000028465
ENSG00000006744
Zinc phosphodiesterase ELAC protein 2
Low tissue specificity
Detected in all
ELMO2
ENSSSCG00000023306
ENSG00000062598
Engulfment and cell motility 2
Low tissue specificity
Detected in all
EMB
ENSSSCG00000029484
ENSG00000170571
Embigin
Tissue enriched
Detected in many
choroid plexus:
76.2
EMC1
ENSSSCG00000003489
ENSG00000127463
ER membrane protein complex subunit 1
Low tissue specificity
Detected in all
ENPP5
ENSSSCG00000001715
ENSG00000112796
Ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)
Tissue enhanced
Detected in all
epididymis:
30.3
ENTPD6
ENSSSCG00000027070
ENSG00000197586
Ectonucleoside triphosphate diphosphohydrolase 6 (putative)
Tissue enhanced
Detected in many
male glands:
34.0
EPB41L4B
ENSSSCG00000005446
ENSG00000095203
Erythrocyte membrane protein band 4.1 like 4B
Tissue enhanced
Detected in all
lens:
74.8
EPOP
ENSSSCG00000035677
ENSG00000273604
Elongin BC and polycomb repressive complex 2 associated protein
Tissue enhanced
Detected in many
cartilage:
17.5
testis:
19.9
ERCC4
ENSSSCG00000007881
ENSG00000175595
ERCC excision repair 4, endonuclease catalytic subunit
Low tissue specificity
Detected in all
ESYT3
ENSSSCG00000027505
ENSG00000158220
Extended synaptotagmin 3
Tissue enhanced
Detected in many
skin:
39.5
EVL
ENSSSCG00000037105
ENSG00000196405
Ena/VASP-like protein
Tissue enhanced
Detected in all
lymphoid tissue:
112.9
EXTL3
ENSSSCG00000009680
ENSG00000012232
Exostosin like glycosyltransferase 3
Low tissue specificity
Detected in all
FAM102B
ENSSSCG00000006850
ENSG00000162636
Family with sequence similarity 102 member B
Low tissue specificity
Detected in many
FAM105A
ENSSSCG00000016782
ENSG00000145569
Family with sequence similarity 105 member A
Tissue enhanced
Detected in many
epididymis:
59.1
FAM117B
ENSSSCG00000016114
ENSG00000138439
Family with sequence similarity 117 member B
Low tissue specificity
Detected in all
FAM118B
ENSSSCG00000025806
ENSG00000197798
Family with sequence similarity 118 member B
Low tissue specificity
Detected in all
FAM131C
ENSSSCG00000003470
ENSG00000185519
Family with sequence similarity 131 member C
Tissue enhanced
Detected in all
stomach:
49.5
FAM196B
ENSSSCG00000017010
ENSG00000204767
Family with sequence similarity 196 member B
Tissue enhanced
Detected in many
lymphoid tissue:
22.6
FAM84A
ENSSSCG00000008664
ENSG00000162981
Family with sequence similarity 84 member A
Tissue enhanced
Detected in many
endometrium:
83.8
epididymis:
49.4
thyroid gland:
73.1
FAM84B
ENSSSCG00000005967
ENSG00000168672
Family with sequence similarity 84 member B
Tissue enhanced
Detected in all
male glands:
92.2
FBXL18
ENSSSCG00000038526
ENSG00000155034
F-box and leucine rich repeat protein 18
Low tissue specificity
Detected in all
FBXO39
ENSSSCG00000017886
ENSG00000177294
F-box protein 39
Low tissue specificity
Detected in all
FBXO6
ENSSSCG00000003420
ENSG00000116663
F-box only protein 6
Low tissue specificity
Detected in all
FCER1G
ENSSSCG00000006357
ENSG00000158869
High affinity immunoglobulin epsilon receptor subunit gamma
Tissue enhanced
Detected in many
bone marrow:
72.1
lymphoid tissue:
92.3
synovial tissue:
75.2
FCHO1
ENSSSCG00000013885
ENSG00000130475
FCH domain only 1
Tissue enhanced
Detected in many
brain:
26.2
lymphoid tissue:
27.3
FGD1
ENSSSCG00000012335
ENSG00000102302
FYVE, RhoGEF and PH domain containing 1
Low tissue specificity
Detected in all
FGD4
ENSSSCG00000000530
ENSG00000139132
FYVE, RhoGEF and PH domain containing 4
Low tissue specificity
Detected in all
FGFR3
ENSSSCG00000030827
ENSG00000068078
Fibroblast growth factor receptor 3
Tissue enhanced
Detected in many
lens:
40.2
male glands:
41.9
FGL2
ENSSSCG00000015413
ENSG00000127951
Fibroleukin precursor
Tissue enhanced
Detected in all
synovial tissue:
62.2
FMN1
ENSSSCG00000040466
ENSG00000248905
Formin 1
Tissue enhanced
Detected in many
retina:
47.2
stomach:
65.7
testis:
48.2
FNBP1
ENSSSCG00000005689
ENSG00000187239
Formin binding protein 1
Low tissue specificity
Detected in all
FNBP1L
ENSSSCG00000006894
ENSG00000137942
Formin binding protein 1 like
Low tissue specificity
Detected in all
FNDC9
ENSSSCG00000017055
ENSG00000172568
Fibronectin type III domain containing 9
Tissue enhanced
Detected in many
brain:
17.6
lymphoid tissue:
34.2
FUZ
ENSSSCG00000003198
ENSG00000010361
Fuzzy planar cell polarity protein
Low tissue specificity
Detected in all
GALNT15
ENSSSCG00000011195
ENSG00000131386
Polypeptide N-acetylgalactosaminyltransferase 15 precursor
Tissue enhanced
Detected in all
cartilage:
57.6
penis:
38.6
GDPD5
ENSSSCG00000014853
ENSG00000158555
Glycerophosphodiester phosphodiesterase domain containing 5
Low tissue specificity
Detected in all
GIT1
ENSSSCG00000017787
ENSG00000108262
GIT ArfGAP 1
Tissue enhanced
Detected in all
testis:
94.4
GJB1
ENSSSCG00000012394
ENSG00000169562
Gap junction protein beta 1
Tissue enhanced
Detected in many
epididymis:
101.6
liver:
97.0
male glands:
100.9
GJB2
ENSSSCG00000031936
ENSG00000165474
Gap junction protein beta 2
Group enriched
Detected in many
cornea:
90.1
male glands:
37.5
mouth:
41.1
skin:
52.8
GLCCI1
ENSSSCG00000015345
ENSG00000106415
Glucocorticoid induced 1
Tissue enhanced
Detected in all
lymphoid tissue:
47.4
GLI4
ENSSSCG00000039881
ENSG00000250571
GLI family zinc finger 4
Low tissue specificity
Detected in all
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