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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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570 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SSBP4
ENSSSCG00000025955
ENSG00000130511
Single stranded DNA binding protein 4
Low tissue specificity
Detected in all
STAMBPL1
ENSSSCG00000010446
ENSG00000138134
AMSH-like protease
Tissue enriched
Detected in many
lens:
83.6
STIM2
ENSSSCG00000008762
ENSG00000109689
Stromal interaction molecule 2
Low tissue specificity
Detected in all
STOML1
ENSSSCG00000001913
ENSG00000067221
Stomatin like 1
Tissue enriched
Detected in all
epididymis:
44.6
SUSD3
ENSSSCG00000022237
ENSG00000157303
Sushi domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
39.3
SYTL5
ENSSSCG00000012233
ENSG00000147041
Synaptotagmin like 5
Tissue enhanced
Detected in many
male glands:
39.9
stomach:
20.9
TAC3
ENSSSCG00000000418
ENSG00000166863
Neurokinin-B
Tissue enhanced
Detected in many
brain:
26.5
lymphoid tissue:
25.6
small intestine:
18.8
testis:
26.4
TACR1
ENSSSCG00000036008
ENSG00000115353
Tachykinin receptor 1
Tissue enhanced
Detected in many
endometrium:
14.2
upper respiratory system:
19.0
TBC1D30
ENSSSCG00000023788
ENSG00000111490
TBC1 domain family member 30
Low tissue specificity
Detected in all
TECPR1
ENSSSCG00000007601
ENSG00000205356
Tectonin beta-propeller repeat containing 1
Tissue enhanced
Detected in many
salivary gland:
36.8
TECPR2
ENSSSCG00000002528
ENSG00000196663
Tectonin beta-propeller repeat containing 2
Low tissue specificity
Detected in all
TESC
ENSSSCG00000009859
ENSG00000088992
Tescalcin
Tissue enhanced
Detected in many
male glands:
41.5
salivary gland:
93.2
THOP1
ENSSSCG00000013468
ENSG00000172009
Thimet oligopeptidase
Tissue enhanced
Detected in all
liver:
41.3
THSD1
ENSSSCG00000009377
ENSG00000136114
Thrombospondin type 1 domain containing 1
Low tissue specificity
Detected in many
TIAM2
ENSSSCG00000004065
ENSG00000146426
T cell lymphoma invasion and metastasis 2
Tissue enhanced
Detected in many
brain:
33.8
cartilage:
71.5
TIGAR
ENSSSCG00000024219
ENSG00000078237
TP53 induced glycolysis regulatory phosphatase
Low tissue specificity
Detected in all
TLR1
ENSSSCG00000026583
ENSG00000174125
Toll-like receptor 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
26.3
TMCO3
ENSSSCG00000009563
ENSG00000150403
Transmembrane and coiled-coil domain-containing protein 3 precursor
Low tissue specificity
Detected in all
TMEM116
ENSSSCG00000009893
ENSG00000198270
Transmembrane protein 116
Tissue enhanced
Detected in many
kidney:
38.5
lung:
28.8
salivary gland:
23.8
stomach:
18.5
TMEM125
ENSSSCG00000024697
ENSG00000179178
Transmembrane protein 125
Tissue enhanced
Detected in many
brain:
30.3
epididymis:
24.1
kidney:
22.3
male glands:
27.0
TMEM176A
ENSSSCG00000016443
ENSG00000002933
Transmembrane protein 176A
Tissue enhanced
Detected in many
gallbladder:
91.7
TMEM176B
ENSSSCG00000016444
ENSG00000106565
Transmembrane protein 176B
Tissue enhanced
Detected in many
gallbladder:
66.8
TMEM181
ENSSSCG00000024876
ENSG00000146433
Transmembrane protein 181
Tissue enhanced
Detected in all
male glands:
55.0
TMEM268
ENSSSCG00000032835
ENSG00000157693
Transmembrane protein 268
Low tissue specificity
Detected in all
TMEM63B
ENSSSCG00000001697
ENSG00000137216
Transmembrane protein 63B
Tissue enhanced
Detected in all
stomach:
63.6
TMEM80
ENSSSCG00000012849
ENSG00000177042
Transmembrane protein 80
Low tissue specificity
Detected in all
TMEM9
ENSSSCG00000027928
ENSG00000116857
Transmembrane protein 9
Low tissue specificity
Detected in many
TNFAIP8L2
ENSSSCG00000006634
ENSG00000163154
Tumor necrosis factor alpha-induced protein 8-like protein 2
Low tissue specificity
Detected in all
TNFSF15
ENSSSCG00000034087
ENSG00000181634
Tumor necrosis factor ligand superfamily member 15
Tissue enhanced
Detected in many
adipose tissue:
17.3
TOM1L2
ENSSSCG00000038639
ENSG00000175662
Target of myb1 like 2 membrane trafficking protein
Low tissue specificity
Detected in all
TOR2A
ENSSSCG00000005619
ENSG00000160404
Torsin family 2 member A
Low tissue specificity
Detected in all
TOX3
ENSSSCG00000002835
ENSG00000103460
TOX high mobility group box family member 3
Tissue enhanced
Detected in many
lens:
84.4
TRIB2
ENSSSCG00000039080
ENSG00000071575
Tribbles pseudokinase 2
Low tissue specificity
Detected in all
TRIM41
ENSSSCG00000032836
ENSG00000146063
Tripartite motif containing 41
Low tissue specificity
Detected in all
TRPC3
ENSSSCG00000009092
ENSG00000138741
Short transient receptor potential channel 3
Tissue enhanced
Detected in many
brain:
12.6
lymphoid tissue:
10.3
TTC7B
ENSSSCG00000002436
ENSG00000165914
Tetratricopeptide repeat domain 7B
Tissue enhanced
Detected in all
epididymis:
55.7
male glands:
46.7
TTYH3
ENSSSCG00000007565
ENSG00000136295
Tweety family member 3
Tissue enhanced
Detected in all
stomach:
68.2
TYROBP
ENSSSCG00000002919
ENSG00000011600
TYRO protein tyrosine kinase-binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
70.7
synovial tissue:
61.1
UBE2T
ENSSSCG00000010923
ENSG00000077152
Ubiquitin conjugating enzyme E2 T
Low tissue specificity
Detected in many
UBE4B
ENSSSCG00000003398
ENSG00000130939
Ubiquitination factor E4B
Low tissue specificity
Detected in all
ULK2
ENSSSCG00000018045
ENSG00000083290
Unc-51 like autophagy activating kinase 2
Low tissue specificity
Detected in all
USP22
ENSSSCG00000035671
ENSG00000124422
Ubiquitin specific peptidase 22
Low tissue specificity
Detected in all
VCAM1
ENSSSCG00000006862
ENSG00000162692
Vascular cell adhesion protein 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
VPS53
ENSSSCG00000017812
ENSG00000141252
VPS53, GARP complex subunit
Low tissue specificity
Detected in all
VSIG4
ENSSSCG00000035170
ENSG00000155659
V-set and immunoglobulin domain-containing protein 4 precursor
Tissue enhanced
Detected in many
adipose tissue:
25.2
synovial tissue:
65.3
VSIR
ENSSSCG00000010280
ENSG00000107738
V-set immunoregulatory receptor
Low tissue specificity
Detected in many
WASL
ENSSSCG00000016604
ENSG00000106299
Wiskott-Aldrich syndrome like
Low tissue specificity
Detected in all
WDFY3
ENSSSCG00000009230
ENSG00000163625
WD repeat and FYVE domain containing 3
Low tissue specificity
Detected in all
WDR13
ENSSSCG00000023759
ENSG00000101940
WD repeat domain 13
Low tissue specificity
Detected in all
WDR25
ENSSSCG00000002517
ENSG00000176473
WD repeat domain 25
Low tissue specificity
Detected in all
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