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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other congenital disorders
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Subclass
Class
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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1159 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GIMD1
ENSSSCG00000039563
ENSG00000250298
GIMAP family P-loop NTPase domain containing 1
Low tissue specificity
Detected in all
GIP
ENSSSCG00000026330
ENSG00000159224
Gastric inhibitory polypeptide precursor
Low tissue specificity
Detected in all
GLOD5
ENSSSCG00000031477
ENSG00000171433
Glyoxalase domain containing 5
Low tissue specificity
Detected in all
GLRA4
ENSSSCG00000012535
ENSG00000188828
Glycine receptor alpha 4
Low tissue specificity
Detected in all
GLT6D1
ENSSSCG00000031107
ENSG00000204007
Glycosyltransferase 6 domain containing 1
Low tissue specificity
Detected in all
GLTPD2
ENSSSCG00000017914
ENSG00000182327
Glycolipid transfer protein domain containing 2
Low tissue specificity
Detected in all
GNAT2
ENSSSCG00000006823
ENSG00000134183
G protein subunit alpha transducin 2
Tissue enriched
Detected in all
retina:
68.6
GP2
ENSSSCG00000007861
ENSG00000169347
Glycoprotein 2
Low tissue specificity
Detected in all
GPR141
ENSSSCG00000016655
ENSG00000187037
G protein-coupled receptor 141
Low tissue specificity
Detected in all
GPR152
ENSSSCG00000033777
ENSG00000175514
G protein-coupled receptor 152
Low tissue specificity
Detected in all
GPR52
ENSSSCG00000040789
ENSG00000203737
G protein-coupled receptor 52
Tissue enhanced
Detected in many
brain:
24.7
heart:
39.7
GPR87
ENSSSCG00000032365
ENSG00000138271
G protein-coupled receptor 87
Tissue enhanced
Detected in all
choroid plexus:
30.0
GPRC5D
ENSSSCG00000029545
ENSG00000111291
G protein-coupled receptor class C group 5 member D
Tissue enriched
Detected in many
skin:
68.9
GPRC6A
ENSSSCG00000036207
ENSG00000173612
G protein-coupled receptor class C group 6 member A
Low tissue specificity
Detected in all
GPX5
ENSSSCG00000001214
ENSG00000224586
Epididymal secretory glutathione peroxidase
Tissue enriched
Detected in many
epididymis:
80.6
GRXCR2
ENSSSCG00000040306
ENSG00000204928
Glutaredoxin and cysteine rich domain containing 2
Low tissue specificity
Detected in all
GSTO2
ENSSSCG00000030271
ENSG00000065621
Glutathione S-transferase omega 2
Tissue enhanced
Detected in all
lymphoid tissue:
22.8
testis:
20.8
GTPBP3
ENSSSCG00000038440
ENSG00000130299
GTP binding protein 3, mitochondrial
Low tissue specificity
Detected in all
GUF1
ENSSSCG00000008807
ENSG00000151806
GUF1 homolog, GTPase
Low tissue specificity
Detected in all
GZMK
ENSSSCG00000016901
ENSG00000113088
Granzyme K precursor
Low tissue specificity
Detected in all
H1FOO
ENSSSCG00000011591
ENSG00000178804
Histone H1oo
Low tissue specificity
Detected in all
HACD4
ENSSSCG00000005164
ENSG00000188921
3-hydroxyacyl-CoA dehydratase 4
Low tissue specificity
Detected in all
HAUS2
ENSSSCG00000035719
ENSG00000137814
HAUS augmin-like complex subunit 2
Low tissue specificity
Detected in all
HAVCR2
ENSSSCG00000028875
ENSG00000135077
Hepatitis A virus cellular receptor 2
Low tissue specificity
Detected in all
HCCS
ENSSSCG00000012111
ENSG00000004961
Holocytochrome c synthase
Low tissue specificity
Detected in all
HDC
ENSSSCG00000004644
ENSG00000140287
Histidine decarboxylase
Low tissue specificity
Detected in all
HIGD1C
ENSSSCG00000035326
ENSG00000214511
HIG1 hypoxia inducible domain family member 1C
Low tissue specificity
Detected in many
HPGD
ENSSSCG00000009699
ENSG00000164120
15-hydroxyprostaglandin dehydrogenase
Low tissue specificity
Detected in all
HRASLS
ENSSSCG00000036094
ENSG00000127252
HRAS like suppressor
Low tissue specificity
Detected in all
HS3ST2
ENSSSCG00000036475
ENSG00000122254
Heparan sulfate-glucosamine 3-sulfotransferase 2
Low tissue specificity
Detected in all
HSH2D
ENSSSCG00000013853
ENSG00000196684
Hematopoietic SH2 domain-containing protein
Low tissue specificity
Detected in all
HTR2B
ENSSSCG00000016273
ENSG00000135914
5-hydroxytryptamine receptor 2B
Low tissue specificity
Detected in all
IBA57
ENSSSCG00000013988
ENSG00000181873
Putative transferase CAF17, mitochondrial
Low tissue specificity
Detected in all
IDO1
ENSSSCG00000007007
ENSG00000131203
Indoleamine 2,3-dioxygenase 1
Tissue enhanced
Detected in all
upper respiratory system:
46.9
IFI44L
ENSSSCG00000027660
ENSG00000137959
Interferon induced protein 44 like
Low tissue specificity
Detected in all
IFIT1
ENSSSCG00000010452
ENSG00000119917
Interferon-induced protein with tetratricopeptide repeats 1
Low tissue specificity
Detected in all
IFIT2
ENSSSCG00000010451
ENSG00000119922
Interferon-induced protein with tetratricopeptide repeats 2
Low tissue specificity
Detected in all
IGF2BP3
ENSSSCG00000036695
ENSG00000136231
Insulin like growth factor 2 mRNA binding protein 3
Low tissue specificity
Detected in all
IGSF6
ENSSSCG00000027967
ENSG00000140749
Immunoglobulin superfamily member 6
Low tissue specificity
Detected in all
IL17F
ENSSSCG00000001749
ENSG00000112116
Interleukin 17F
Low tissue specificity
Detected in all
IL17RB
ENSSSCG00000037914
ENSG00000056736
Interleukin 17 receptor B
Low tissue specificity
Detected in all
IL23R
ENSSSCG00000003801
ENSG00000162594
Interleukin-23 receptor
Low tissue specificity
Detected in all
IL26
ENSSSCG00000039976
ENSG00000111536
Interleukin 26
Low tissue specificity
Detected in all
IL5
ENSSSCG00000014278
ENSG00000113525
Interleukin-5
Low tissue specificity
Detected in all
ITFG2
ENSSSCG00000000742
ENSG00000111203
Integrin alpha FG-GAP repeat containing 2
Low tissue specificity
Detected in all
ITPRIPL1
ENSSSCG00000037580
ENSG00000198885
ITPRIP like 1
Low tissue specificity
Detected in all
IZUMO1R
ENSSSCG00000014952
ENSG00000183560
IZUMO1 receptor, JUNO
Low tissue specificity
Detected in all
KCNE4
ENSSSCG00000038149
ENSG00000152049
Potassium voltage-gated channel subfamily E regulatory subunit 4
Low tissue specificity
Detected in all
KCNK16
ENSSSCG00000037484
ENSG00000095981
Potassium two pore domain channel subfamily K member 16
Low tissue specificity
Detected in all
KCNMB3
ENSSSCG00000029240
ENSG00000171121
Potassium calcium-activated channel subfamily M regulatory beta subunit 3
Tissue enhanced
Detected in many
lymphoid tissue:
16.0
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