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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other congenital disorders
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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1159 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DBR1
ENSSSCG00000031098
ENSG00000138231
Debranching RNA lariats 1
Low tissue specificity
Detected in all
DBX1
ENSSSCG00000013350
ENSG00000109851
Developing brain homeobox 1
Low tissue specificity
Detected in all
DCLRE1C
ENSSSCG00000011049
ENSG00000152457
Protein artemis
Low tissue specificity
Detected in all
DCSTAMP
ENSSSCG00000006043
ENSG00000164935
Dendritic cell-specific transmembrane protein
Low tissue specificity
Detected in all
DDX47
ENSSSCG00000033149
ENSG00000213782
DEAD-box helicase 47
Low tissue specificity
Detected in all
DEFB128
ENSSSCG00000034080
ENSG00000185982
Defensin beta 128
Tissue enriched
Detected in some
epididymis:
252.3
DEPDC4
ENSSSCG00000036721
ENSG00000166153
DEP domain containing 4
Low tissue specificity
Detected in all
DNA2
ENSSSCG00000010240
ENSG00000138346
DNA replication helicase/nuclease 2
Low tissue specificity
Detected in all
DRGX
ENSSSCG00000037404
ENSG00000165606
Dorsal root ganglia homeobox
Low tissue specificity
Detected in all
DUS4L
ENSSSCG00000028433
ENSG00000105865
Dihydrouridine synthase 4 like
Tissue enhanced
Detected in all
lens:
45.3
EDRF1
ENSSSCG00000010741
ENSG00000107938
Erythroid differentiation regulatory factor 1
Low tissue specificity
Detected in all
ELF5
ENSSSCG00000013301
ENSG00000135374
ETS-related transcription factor Elf-5
Tissue enriched
Detected in all
male glands:
114.9
ELP6
ENSSSCG00000011336
ENSG00000163832
Elongator acetyltransferase complex subunit 6
Low tissue specificity
Detected in all
EMX2
ENSSSCG00000032558
ENSG00000170370
Empty spiracles homeobox 2
Tissue enhanced
Detected in many
epididymis:
46.6
male glands:
49.0
ENGASE
ENSSSCG00000032411
ENSG00000167280
Endo-beta-N-acetylglucosaminidase
Low tissue specificity
Detected in all
ENPP7
ENSSSCG00000017163
ENSG00000182156
Ectonucleotide pyrophosphatase/phosphodiesterase 7
Tissue enhanced
Detected in many
epididymis:
10.7
EPB42
ENSSSCG00000004714
ENSG00000166947
Erythrocyte membrane protein band 4.2
Low tissue specificity
Detected in all
EPGN
ENSSSCG00000040736
ENSG00000182585
Epithelial mitogen
Low tissue specificity
Detected in all
EREG
ENSSSCG00000038185
ENSG00000124882
Epiregulin
Low tissue specificity
Detected in all
ETFBKMT
ENSSSCG00000033766
ENSG00000139160
Electron transfer flavoprotein beta subunit lysine methyltransferase
Low tissue specificity
Detected in all
FAAP24
ENSSSCG00000040905
ENSG00000131944
Fanconi anemia core complex associated protein 24
Low tissue specificity
Detected in all
FAM129C
ENSSSCG00000013882
ENSG00000167483
Family with sequence similarity 129 member C
Low tissue specificity
Detected in all
FAM163A
ENSSSCG00000033352
ENSG00000143340
Family with sequence similarity 163 member A
Tissue enhanced
Detected in all
adrenal gland:
38.7
FAM185A
ENSSSCG00000015414
ENSG00000222011
Family with sequence similarity 185 member A
Low tissue specificity
Detected in all
FAM198B
ENSSSCG00000008873
ENSG00000164125
Family with sequence similarity 198 member B
Low tissue specificity
Detected in all
FAM237A
ENSSSCG00000036691
ENSG00000235118
Family with sequence similarity 237 member A
Low tissue specificity
Detected in all
FAM237B
ENSSSCG00000031091
ENSG00000283267
Family with sequence similarity 237 member B
Low tissue specificity
Detected in all
FAM76A
ENSSSCG00000027894
ENSG00000009780
Protein FAM76A
Low tissue specificity
Detected in all
FAM83D
ENSSSCG00000007351
ENSG00000101447
Family with sequence similarity 83 member D
Tissue enhanced
Detected in all
smooth muscle:
55.1
FANCC
ENSSSCG00000033654
ENSG00000158169
Fanconi anemia complementation group C
Low tissue specificity
Detected in all
FANCF
ENSSSCG00000037501
ENSG00000183161
Fanconi anemia complementation group F
Low tissue specificity
Detected in all
FASTKD1
ENSSSCG00000015933
ENSG00000138399
FAST kinase domains 1
Low tissue specificity
Detected in all
FBXL13
ENSSSCG00000037822
ENSG00000161040
F-box and leucine rich repeat protein 13
Low tissue specificity
Detected in all
FBXO43
ENSSSCG00000006068
ENSG00000156509
F-box protein 43
Tissue enhanced
Detected in all
testis:
33.2
FCAR
ENSSSCG00000003284
ENSG00000186431
Fc fragment of IgA receptor
Low tissue specificity
Detected in all
FCGR1A
ENSSSCG00000006678
ENSG00000150337
High affinity immunoglobulin gamma Fc receptor I precursor
Low tissue specificity
Detected in all
FCRL6
ENSSSCG00000006397
ENSG00000181036
Fc receptor like 6
Tissue enriched
Detected in many
lymphoid tissue:
25.9
FDXACB1
ENSSSCG00000021871
ENSG00000255561
Ferredoxin-fold anticodon binding domain containing 1
Low tissue specificity
Detected in all
FFAR2
ENSSSCG00000032438
ENSG00000126262
Free fatty acid receptor 2
Low tissue specificity
Detected in all
FSHB
ENSSSCG00000013328
ENSG00000131808
Follitropin subunit beta
Tissue enriched
Detected in many
pituitary gland:
353.5
GAPT
ENSSSCG00000035276
ENSG00000175857
GRB2 binding adaptor protein, transmembrane
Low tissue specificity
Detected in all
GAS2L3
ENSSSCG00000000874
ENSG00000139354
Growth arrest specific 2 like 3
Tissue enriched
Detected in all
vagus nerve:
70.2
GCM1
ENSSSCG00000032538
ENSG00000137270
Glial cells missing homolog 1
Low tissue specificity
Detected in all
GCNT7
ENSSSCG00000007497
ENSG00000124091
Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7
Low tissue specificity
Detected in all
GDF15
ENSSSCG00000034260
ENSG00000130513
Growth/differentiation factor 15 precursor
Low tissue specificity
Detected in all
GEMIN7
ENSSSCG00000033194
ENSG00000142252
Gem nuclear organelle associated protein 7
Low tissue specificity
Detected in all
GFI1B
ENSSSCG00000005737
ENSG00000165702
Growth factor independent 1B transcriptional repressor
Low tissue specificity
Detected in all
GGT6
ENSSSCG00000017883
ENSG00000167741
Gamma-glutamyltransferase 6
Tissue enhanced
Detected in all
cornea:
28.9
GHSR
ENSSSCG00000011754
ENSG00000121853
Growth hormone secretagogue receptor type 1
Low tissue specificity
Detected in all
GIF
ENSSSCG00000013117
ENSG00000134812
Gastric intrinsic factor
Tissue enhanced
Detected in all
small intestine:
65.4
stomach:
26.7
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