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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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1159 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C7orf57
ENSSSCG00000033266
ENSG00000164746
Chromosome 7 open reading frame 57
Low tissue specificity
Detected in all
C8orf37
ENSSSCG00000034398
ENSG00000156172
Chromosome 8 open reading frame 37
Low tissue specificity
Detected in all
C8orf88
ENSSSCG00000040562
ENSG00000253250
Chromosome 8 open reading frame 88
Tissue enhanced
Detected in all
lens:
83.5
CA13
ENSSSCG00000006143
ENSG00000185015
Carbonic anhydrase 13
Low tissue specificity
Detected in all
CALHM6
ENSSSCG00000036064
ENSG00000188820
Protein FAM26F
Low tissue specificity
Detected in all
CATIP
ENSSSCG00000016187
ENSG00000158428
Ciliogenesis-associated TTC17-interacting protein
Low tissue specificity
Detected in all
CBR3
ENSSSCG00000012053
ENSG00000159231
Carbonyl reductase
Low tissue specificity
Detected in all
CCDC198
ENSSSCG00000005067
ENSG00000100557
Coiled-coil domain containing 198
Tissue enhanced
Detected in all
kidney:
42.5
CCDC22
ENSSSCG00000012297
ENSG00000101997
Coiled-coil domain containing 22
Low tissue specificity
Detected in all
CCDC59
ENSSSCG00000038987
ENSG00000133773
Thyroid transcription factor 1-associated protein 26
Low tissue specificity
Detected in all
CCDC82
ENSSSCG00000014972
ENSG00000149231
Coiled-coil domain containing 82
Low tissue specificity
Detected in all
CCL11
ENSSSCG00000040648
ENSG00000108700
C-C motif chemokine 8 precursor
Low tissue specificity
Detected in all
CCR8
ENSSSCG00000025846
ENSG00000179934
C-C motif chemokine receptor 8
Low tissue specificity
Detected in all
CD109
ENSSSCG00000004485
ENSG00000156535
CD109 molecule
Tissue enhanced
Detected in all
cartilage:
56.8
cornea:
44.6
CD164L2
ENSSSCG00000003575
ENSG00000174950
CD164 molecule like 2
Low tissue specificity
Detected in all
CD207
ENSSSCG00000008319
ENSG00000116031
C-type lectin domain family 4 member K
Tissue enhanced
Detected in many
retina:
25.7
skin:
18.6
CD274
ENSSSCG00000005211
ENSG00000120217
Programmed cell death 1 ligand 1 precursor
Low tissue specificity
Detected in all
CD28
ENSSSCG00000028561
ENSG00000178562
T-cell-specific surface glycoprotein CD28 precursor
Low tissue specificity
Detected in all
CD70
ENSSSCG00000031115
ENSG00000125726
CD70 antigen
Low tissue specificity
Detected in all
CD80
ENSSSCG00000011899
ENSG00000121594
T-lymphocyte activation antigen CD80 precursor
Low tissue specificity
Detected in all
CD86
ENSSSCG00000011877
ENSG00000114013
T-lymphocyte activation antigen CD86 precursor
Low tissue specificity
Detected in all
CDNF
ENSSSCG00000011053
ENSG00000185267
Cerebral dopamine neurotrophic factor
Low tissue specificity
Detected in all
CDX4
ENSSSCG00000021225
ENSG00000131264
Caudal type homeobox 4
Low tissue specificity
Detected in many
CENPS
ENSSSCG00000003403
ENSG00000175279
Centromere protein S
Low tissue specificity
Detected in all
CHAC2
ENSSSCG00000037577
ENSG00000143942
ChaC cation transport regulator homolog 2
Low tissue specificity
Detected in all
CHCHD1
ENSSSCG00000010308
ENSG00000172586
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
Low tissue specificity
Detected in all
CHI3L2
ENSSSCG00000006796
ENSG00000064886
Chitinase 3 like 2
Low tissue specificity
Detected in all
CHRNA1
ENSSSCG00000015969
ENSG00000138435
Cholinergic receptor nicotinic alpha 1 subunit
Low tissue specificity
Detected in all
CHRNA3
ENSSSCG00000001752
ENSG00000080644
Cholinergic receptor nicotinic alpha 3 subunit
Low tissue specificity
Detected in all
CHUK
ENSSSCG00000010548
ENSG00000213341
Inhibitor of nuclear factor kappa-B kinase subunit alpha
Low tissue specificity
Detected in all
CIART
ENSSSCG00000038374
ENSG00000159208
Circadian associated repressor of transcription
Low tissue specificity
Detected in all
CLDN1
ENSSSCG00000040904
ENSG00000163347
Claudin-1
Low tissue specificity
Detected in all
CLEC12A
ENSSSCG00000039287
ENSG00000172322
C-type lectin domain family 12 member A
Low tissue specificity
Detected in all
CLEC2B
ENSSSCG00000000656
ENSG00000110852
Uncharacterized protein LOC100520839
Low tissue specificity
Detected in all
CLP1
ENSSSCG00000031442
ENSG00000172409
Cleavage and polyadenylation factor I subunit 1
Low tissue specificity
Detected in all
CLSPN
ENSSSCG00000003628
ENSG00000092853
Claspin
Low tissue specificity
Detected in all
COX18
ENSSSCG00000008947
ENSG00000163626
COX18, cytochrome c oxidase assembly factor
Low tissue specificity
Detected in all
CPA6
ENSSSCG00000006200
ENSG00000165078
Carboxypeptidase A6
Low tissue specificity
Detected in all
CPN1
ENSSSCG00000010545
ENSG00000120054
Carboxypeptidase N subunit 1
Tissue enhanced
Detected in all
cartilage:
64.6
liver:
42.0
CRHR2
ENSSSCG00000033514
ENSG00000106113
Corticotropin-releasing factor receptor 2
Low tissue specificity
Detected in all
CRISP1
ENSSSCG00000001739
ENSG00000124812
Cysteine-rich secretory protein 1 precursor
Group enriched
Detected in all
ductus deferens:
38.4
epididymis:
73.0
CRTAM
ENSSSCG00000015137
ENSG00000109943
Cytotoxic and regulatory T cell molecule
Tissue enhanced
Detected in all
brain:
25.1
CSF2
ENSSSCG00000023737
ENSG00000164400
Granulocyte-macrophage colony-stimulating factor precursor
Tissue enhanced
Detected in many
lung:
9.1
CSTF1
ENSSSCG00000007494
ENSG00000101138
Cleavage stimulation factor subunit 1
Low tissue specificity
Detected in all
CWF19L1
ENSSSCG00000010550
ENSG00000095485
CWF19 like 1, cell cycle control (S. pombe)
Low tissue specificity
Detected in all
CXCL10
ENSSSCG00000032474
ENSG00000169245
C-X-C motif chemokine 10 precursor
Low tissue specificity
Detected in all
CXorf56
ENSSSCG00000012622
ENSG00000018610
Chromosome X open reading frame 56
Low tissue specificity
Detected in all
CYP24A1
ENSSSCG00000007486
ENSG00000019186
1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial
Tissue enhanced
Detected in all
upper respiratory system:
29.3
CYP27B1
ENSSSCG00000028637
ENSG00000111012
25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial
Low tissue specificity
Detected in all
CYSLTR2
ENSSSCG00000009399
ENSG00000152207
Cysteinyl leukotriene receptor 2
Low tissue specificity
Detected in all
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