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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
15
16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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1159 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SIGLEC15
ENSSSCG00000004493
ENSG00000197046
Sialic acid binding Ig like lectin 15
Tissue enhanced
Detected in all
dura mater:
21.5
SIL1
ENSSSCG00000024189
ENSG00000120725
SIL1 nucleotide exchange factor
Low tissue specificity
Detected in all
SIRT4
ENSSSCG00000009901
ENSG00000089163
NAD-dependent protein lipoamidase sirtuin-4, mitochondrial
Low tissue specificity
Detected in all
SLAMF8
ENSSSCG00000006398
ENSG00000158714
SLAM family member 8
Low tissue specificity
Detected in all
SLAMF9
ENSSSCG00000006400
ENSG00000162723
SLAM family member 9
Low tissue specificity
Detected in all
SLC13A1
ENSSSCG00000016609
ENSG00000081800
Solute carrier family 13 member 1
Low tissue specificity
Detected in all
SLC16A9
ENSSSCG00000010210
ENSG00000165449
Solute carrier family 16 member 9
Tissue enhanced
Detected in all
dura mater:
44.4
SLC17A3
ENSSSCG00000037547
ENSG00000124564
Solute carrier family 17 member 3
Low tissue specificity
Detected in all
SLC18B1
ENSSSCG00000004178
ENSG00000146409
Solute carrier family 18 member B1
Low tissue specificity
Detected in all
SLC22A13
ENSSSCG00000011256
ENSG00000172940
Solute carrier family 22 member 13
Low tissue specificity
Detected in all
SLC22A16
ENSSSCG00000004399
ENSG00000004809
Solute carrier family 22 member 16
Tissue enhanced
Detected in all
male glands:
27.6
SLC25A35
ENSSSCG00000022395
ENSG00000125434
Solute carrier family 25 member 35
Tissue enriched
Detected in many
pineal gland:
87.6
SLC26A4
ENSSSCG00000028969
ENSG00000091137
Solute carrier family 26 member 4
Tissue enhanced
Detected in all
esophagus:
25.5
SLC26A6
ENSSSCG00000011361
ENSG00000225697
Solute carrier family 26 member 6
Low tissue specificity
Detected in all
SLC2A7
ENSSSCG00000003390
ENSG00000197241
Solute carrier family 2 member 7
Low tissue specificity
Detected in all
SLC36A3
ENSSSCG00000038877
ENSG00000186334
Solute carrier family 36 member 3
Low tissue specificity
Detected in all
SLC4A1
ENSSSCG00000017358
ENSG00000004939
Solute carrier family 4 member 1 (Diego blood group)
Low tissue specificity
Detected in all
SLC5A8
ENSSSCG00000000871
ENSG00000256870
Sodium-coupled monocarboxylate transporter 1
Tissue enriched
Detected in all
male glands:
106.7
SLC6A4
ENSSSCG00000017797
ENSG00000108576
Solute carrier family 6 member 4
Low tissue specificity
Detected in all
SLFN14
ENSSSCG00000031114
ENSG00000236320
Schlafen family member 14
Low tissue specificity
Detected in all
SMIM19
ENSSSCG00000031857
ENSG00000176209
Small integral membrane protein 19
Low tissue specificity
Detected in all
SP8
ENSSSCG00000031078
ENSG00000164651
Sp8 transcription factor
Group enriched
Detected in some
brain:
27.7
male glands:
31.4
upper respiratory system:
19.0
SPINK6
ENSSSCG00000039674
ENSG00000178172
Serine peptidase inhibitor, Kazal type 6
Tissue enriched
Detected in many
ductus deferens:
23.1
SRARP
ENSSSCG00000036026
ENSG00000183888
Steroid receptor associated and regulated protein
Low tissue specificity
Detected in all
SSTR2
ENSSSCG00000017249
ENSG00000180616
Somatostatin receptor 2
Low tissue specificity
Detected in all
STX17
ENSSSCG00000005386
ENSG00000136874
Syntaxin 17
Low tissue specificity
Detected in all
SWSAP1
ENSSSCG00000037146
ENSG00000173928
SWIM-type zinc finger 7 associated protein 1
Low tissue specificity
Detected in all
TACO1
ENSSSCG00000036944
ENSG00000136463
Translational activator of cytochrome c oxidase 1
Low tissue specificity
Detected in all
TACR2
ENSSSCG00000010254
ENSG00000075073
Tachykinin receptor 2
Tissue enriched
Detected in all
smooth muscle:
52.1
TAS2R1
ENSSSCG00000028554
ENSG00000169777
Taste 2 receptor member 1
Tissue enhanced
Detected in many
lymphoid tissue:
6.6
TBC1D25
ENSSSCG00000040599
ENSG00000068354
TBC1 domain family member 25
Low tissue specificity
Detected in all
TBCCD1
ENSSSCG00000011797
ENSG00000113838
TBCC domain-containing protein 1
Low tissue specificity
Detected in all
TBPL2
ENSSSCG00000005059
ENSG00000182521
TATA-box binding protein like 2
Low tissue specificity
Detected in all
TBX22
ENSSSCG00000012449
ENSG00000122145
T-box 22
Low tissue specificity
Detected in all
TCEANC2
ENSSSCG00000021216
ENSG00000116205
Transcription elongation factor A N-terminal and central domain containing 2
Low tissue specificity
Detected in all
TCF15
ENSSSCG00000036940
ENSG00000125878
Transcription factor 15
Low tissue specificity
Detected in all
TCF23
ENSSSCG00000027409
ENSG00000163792
Transcription factor 23
Tissue enhanced
Detected in all
cervix:
69.1
endometrium:
24.3
TCTEX1D1
ENSSSCG00000031352
ENSG00000152760
Tctex1 domain-containing protein 1
Low tissue specificity
Detected in all
TEFM
ENSSSCG00000017741
ENSG00000172171
Transcription elongation factor, mitochondrial
Low tissue specificity
Detected in all
TESPA1
ENSSSCG00000000299
ENSG00000135426
Thymocyte expressed, positive selection associated 1
Tissue enhanced
Detected in all
lymphoid tissue:
105.1
TEX11
ENSSSCG00000030850
ENSG00000120498
Testis expressed 11
Low tissue specificity
Detected in all
TEX36
ENSSSCG00000032832
ENSG00000175018
Testis expressed 36
Low tissue specificity
Detected in all
TFB2M
ENSSSCG00000023775
ENSG00000162851
Transcription factor B2, mitochondrial
Low tissue specificity
Detected in all
THG1L
ENSSSCG00000036047
ENSG00000113272
TRNA-histidine guanylyltransferase 1 like
Low tissue specificity
Detected in all
THNSL1
ENSSSCG00000011071
ENSG00000185875
Threonine synthase like 1
Low tissue specificity
Detected in all
THTPA
ENSSSCG00000002016
ENSG00000259431
Thiamine triphosphatase
Low tissue specificity
Detected in all
THUMPD3
ENSSSCG00000011542
ENSG00000134077
THUMP domain containing 3
Low tissue specificity
Detected in all
TM4SF18
ENSSSCG00000011701
ENSG00000163762
Transmembrane 4 L six family member 18
Low tissue specificity
Detected in all
TMC3
ENSSSCG00000001789
ENSG00000188869
Transmembrane channel like 3
Low tissue specificity
Detected in many
TMEM132C
ENSSSCG00000009753
ENSG00000181234
Transmembrane protein 132C
Tissue enhanced
Detected in all
cornea:
23.1
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