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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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1159 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMEM161A
ENSSSCG00000033168
ENSG00000064545
Transmembrane protein 161A
Low tissue specificity
Detected in all
TMEM173
ENSSSCG00000014349
ENSG00000184584
Stimulator of interferon genes protein
Low tissue specificity
Detected in all
TMEM216
ENSSSCG00000013084
ENSG00000187049
Transmembrane protein 216
Low tissue specificity
Detected in all
TMEM241
ENSSSCG00000040452
ENSG00000134490
Transmembrane protein 241
Low tissue specificity
Detected in all
TMEM252
ENSSSCG00000037125
ENSG00000181778
Transmembrane protein 252
Tissue enhanced
Detected in all
kidney:
27.6
TMEM42
ENSSSCG00000031576
ENSG00000169964
Transmembrane protein 42
Low tissue specificity
Detected in all
TMEM52B
ENSSSCG00000032431
ENSG00000165685
Transmembrane protein 52B
Group enriched
Detected in many
heart:
41.0
kidney:
48.6
retina:
19.4
TMEM71
ENSSSCG00000005951
ENSG00000165071
Transmembrane protein 71
Low tissue specificity
Detected in all
TMPRSS9
ENSSSCG00000028363
ENSG00000178297
Transmembrane serine protease 9
Group enriched
Detected in many
epididymis:
28.4
lymphoid tissue:
12.2
TNFAIP8L1
ENSSSCG00000034615
ENSG00000185361
TNF alpha induced protein 8 like 1
Low tissue specificity
Detected in all
TNFSF11
ENSSSCG00000009429
ENSG00000120659
TNF superfamily member 11
Low tissue specificity
Detected in all
TNFSF9
ENSSSCG00000022370
ENSG00000125657
TNF superfamily member 9
Low tissue specificity
Detected in all
TNN
ENSSSCG00000015507
ENSG00000120332
Tenascin N
Tissue enhanced
Detected in all
dura mater:
55.0
TRAF6
ENSSSCG00000038082
ENSG00000175104
TNF receptor-associated factor 6
Low tissue specificity
Detected in all
TRAPPC12
ENSSSCG00000024665
ENSG00000171853
Trafficking protein particle complex 12
Low tissue specificity
Detected in all
TRAV3
ENSSSCG00000032592
T cell receptor alpha variable 3 (gene/pseudogene)
Low tissue specificity
Detected in all
TRAV6
ENSSSCG00000036635
T cell receptor alpha variable 6
Low tissue specificity
Detected in all
TREM1
ENSSSCG00000033251
ENSG00000124731
Triggering receptor expressed on myeloid cells 1
Low tissue specificity
Detected in all
TRIB3
ENSSSCG00000039862
ENSG00000101255
Tribbles pseudokinase 3
Tissue enhanced
Detected in all
ovary:
34.5
TRIM58
ENSSSCG00000040066
ENSG00000162722
Tripartite motif containing 58
Tissue enhanced
Detected in all
lymphoid tissue:
27.9
TRMO
ENSSSCG00000005370
ENSG00000136932
TRNA (adenine(37)-N6)-methyltransferase
Low tissue specificity
Detected in all
TRMT6
ENSSSCG00000007046
ENSG00000089195
TRNA methyltransferase 6
Low tissue specificity
Detected in all
TRUB1
ENSSSCG00000010653
ENSG00000165832
TruB pseudouridine synthase family member 1
Low tissue specificity
Detected in all
TSHR
ENSSSCG00000031771
ENSG00000165409
Thyrotropin receptor precursor
Tissue enhanced
Detected in all
thyroid gland:
48.6
TSNAX
ENSSSCG00000010171
TSNAX-DISC1 readthrough (NMD candidate)
Low tissue specificity
Detected in all
TSPAN12
ENSSSCG00000016620
ENSG00000106025
Tetraspanin-12
Tissue enhanced
Detected in all
heart:
63.7
TSPO2
ENSSSCG00000038553
ENSG00000112212
Translocator protein 2
Low tissue specificity
Detected in all
TXNDC16
ENSSSCG00000035934
ENSG00000087301
Thioredoxin domain containing 16
Low tissue specificity
Detected in all
TYRP1
ENSSSCG00000005193
ENSG00000107165
5,6-dihydroxyindole-2-carboxylic acid oxidase precursor
Low tissue specificity
Detected in all
ULBP1
ENSSSCG00000026042
NKG2D ligand 1 precursor
Low tissue specificity
Detected in all
UPK3A
ENSSSCG00000031423
ENSG00000100373
Uroplakin 3A
Low tissue specificity
Detected in all
UTP18
ENSSSCG00000017593
ENSG00000011260
UTP18, small subunit processome component
Low tissue specificity
Detected in all
UTP23
ENSSSCG00000030493
ENSG00000147679
UTP23, small subunit processome component
Low tissue specificity
Detected in all
VAMP5
ENSSSCG00000033135
ENSG00000168899
Vesicle associated membrane protein 5
Low tissue specificity
Detected in all
VGLL1
ENSSSCG00000025438
ENSG00000102243
Vestigial like family member 1
Low tissue specificity
Detected in all
VPS37A
ENSSSCG00000006984
ENSG00000155975
VPS37A, ESCRT-I subunit
Low tissue specificity
Detected in all
VPS37D
ENSSSCG00000033358
ENSG00000176428
VPS37D, ESCRT-I subunit
Low tissue specificity
Detected in all
WISP2
ENSSSCG00000031648
ENSG00000064205
WNT1 inducible signaling pathway protein 2
Low tissue specificity
Detected in all
WISP3
ENSSSCG00000004422
ENSG00000112761
WNT1 inducible signaling pathway protein 3
Group enriched
Detected in all
cartilage:
57.5
male glands:
22.0
WNT10B
ENSSSCG00000000182
ENSG00000169884
Protein Wnt-10b precursor
Low tissue specificity
Detected in all
WNT2B
ENSSSCG00000006780
ENSG00000134245
Wnt family member 2B
Low tissue specificity
Detected in all
WNT9B
ENSSSCG00000035524
ENSG00000158955
Wnt family member 9B
Low tissue specificity
Detected in all
WRN
ENSSSCG00000015840
ENSG00000165392
Werner syndrome RecQ like helicase
Low tissue specificity
Detected in all
XKR5
ENSSSCG00000015756
ENSG00000275591
XK related 5
Low tissue specificity
Detected in all
XRCC2
ENSSSCG00000032315
ENSG00000196584
X-ray repair cross complementing 2
Low tissue specificity
Detected in all
ZCRB1
ENSSSCG00000034066
ENSG00000139168
Zinc finger CCHC-type and RNA binding motif containing 1
Low tissue specificity
Detected in all
ZDHHC23
ENSSSCG00000011914
ENSG00000184307
Zinc finger DHHC-type containing 23
Low tissue specificity
Detected in all
ZFYVE19
ENSSSCG00000004761
ENSG00000166140
Zinc finger FYVE-type containing 19
Low tissue specificity
Detected in all
ZGRF1
ENSSSCG00000009120
ENSG00000138658
Zinc finger GRF-type containing 1
Low tissue specificity
Detected in all
ZNF283
ENSSSCG00000003072
ENSG00000167637
Zinc finger protein 283
Low tissue specificity
Detected in all
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