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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NDN
ENSSSCG00000004834
ENSG00000182636
Necdin
Tissue enhanced
Detected in all
brain:
40.5
NDRG2
ENSSSCG00000030309
ENSG00000165795
Protein NDRG2
Tissue enhanced
Detected in many
brain:
98.4
NEBL
ENSSSCG00000011090
ENSG00000078114
Nebulette
Tissue enriched
Detected in many
heart:
215.3
NEU4
ENSSSCG00000037090
ENSG00000204099
Neuraminidase 4
Tissue enhanced
Detected in some
brain:
10.1
lymphoid tissue:
4.1
thyroid gland:
5.7
NEURL1
ENSSSCG00000010603
ENSG00000107954
Neuralized E3 ubiquitin protein ligase 1
Tissue enhanced
Detected in many
skeletal muscle:
59.4
NISCH
ENSSSCG00000011442
ENSG00000010322
Nischarin
Low tissue specificity
Detected in all
NKD2
ENSSSCG00000037791
ENSG00000145506
Naked cuticle homolog 2
Tissue enhanced
Detected in many
brain:
44.8
NKX2-2
ENSSSCG00000040017
ENSG00000125820
NK2 homeobox 2
Tissue enriched
Detected in some
brain:
17.6
NKX6-2
ENSSSCG00000036098
ENSG00000148826
NK6 homeobox 2
Group enriched
Detected in some
brain:
27.0
stomach:
13.8
NOVA2
ENSSSCG00000035029
ENSG00000104967
NOVA alternative splicing regulator 2
Tissue enhanced
Detected in many
brain:
25.8
NPC1
ENSSSCG00000003707
ENSG00000141458
Niemann-Pick C1 protein precursor
Tissue enhanced
Detected in all
adrenal gland:
51.1
brain:
53.2
NPFFR1
ENSSSCG00000010266
ENSG00000148734
Neuropeptide FF receptor 1
Tissue enhanced
Detected in some
brain:
4.2
epididymis:
2.8
fallopian tube:
8.4
skin:
2.9
NRK
ENSSSCG00000012546
ENSG00000123572
Nik related kinase
Tissue enhanced
Detected in some
brain:
11.4
cartilage:
51.2
kidney:
16.0
NRN1L
ENSSSCG00000032680
ENSG00000188038
Neuritin 1 like
Tissue enriched
Detected in some
pineal gland:
93.6
NT5M
ENSSSCG00000018052
ENSG00000205309
5',3'-nucleotidase, mitochondrial
Tissue enhanced
Detected in many
testis:
41.8
NUAK1
ENSSSCG00000032861
ENSG00000074590
NUAK family kinase 1
Low tissue specificity
Detected in all
OCA2
ENSSSCG00000015854
ENSG00000104044
P protein
Tissue enhanced
Detected in some
brain:
11.7
choroid plexus:
26.8
kidney:
21.6
lens:
17.4
thyroid gland:
16.9
OSBPL2
ENSSSCG00000036835
ENSG00000130703
Oxysterol binding protein like 2
Low tissue specificity
Detected in all
OTUB1
ENSSSCG00000013045
ENSG00000167770
Ubiquitin thioesterase OTUB1
Low tissue specificity
Detected in all
OTUD5
ENSSSCG00000021934
ENSG00000068308
OTU deubiquitinase 5
Low tissue specificity
Detected in all
P3H1
ENSSSCG00000023920
ENSG00000117385
Prolyl 3-hydroxylase 1
Tissue enhanced
Detected in all
cartilage:
122.2
lens:
87.8
PACS2
ENSSSCG00000037671
ENSG00000179364
Phosphofurin acidic cluster sorting protein 2
Low tissue specificity
Detected in all
PADI2
ENSSSCG00000026478
ENSG00000117115
Peptidyl arginine deiminase 2
Group enriched
Detected in many
brain:
110.3
upper respiratory system:
33.2
PALD1
ENSSSCG00000036446
ENSG00000107719
Phosphatase domain containing, paladin 1
Low tissue specificity
Detected in all
PARP1
ENSSSCG00000023660
ENSG00000143799
Poly(ADP-ribose) polymerase 1
Low tissue specificity
Detected in all
PCDH17
ENSSSCG00000009446
ENSG00000118946
Protocadherin 17
Tissue enhanced
Detected in many
brain:
36.9
PCDH19
ENSSSCG00000012479
ENSG00000165194
Protocadherin 19
Tissue enhanced
Detected in many
lens:
38.0
PCDHB2
ENSSSCG00000014379
ENSG00000112852
Protocadherin beta 2
Low tissue specificity
Detected in many
PCDHB5
ENSSSCG00000014380
ENSG00000113209
Protocadherin beta 5
Low tissue specificity
Detected in many
PCDHB6
ENSSSCG00000024873
ENSG00000113211
Protocadherin beta 6
Tissue enhanced
Detected in all
cartilage:
21.9
PDE10A
ENSSSCG00000004027
ENSG00000112541
Phosphodiesterase 10A
Tissue enhanced
Detected in many
brain:
69.6
PDE1C
ENSSSCG00000016668
ENSG00000154678
Phosphodiesterase 1C
Tissue enhanced
Detected in many
brain:
29.8
pineal gland:
34.2
PDE4B
ENSSSCG00000003805
ENSG00000184588
CAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 2
Low tissue specificity
Detected in many
PEA15
ENSSSCG00000032164
ENSG00000162734
Proliferation and apoptosis adaptor protein 15
Tissue enriched
Detected in all
lens:
683.5
PELI3
ENSSSCG00000012944
ENSG00000174516
Pellino E3 ubiquitin protein ligase family member 3
Tissue enriched
Detected in all
lens:
45.5
PENK
ENSSSCG00000006243
ENSG00000181195
Proenkephalin
Tissue enhanced
Detected in many
adrenal gland:
92.5
brain:
162.9
PFKP
ENSSSCG00000011158
ENSG00000067057
Phosphofructokinase, platelet
Low tissue specificity
Detected in many
PHLPP1
ENSSSCG00000004896
ENSG00000081913
PH domain and leucine rich repeat protein phosphatase 1
Tissue enhanced
Detected in all
brain:
46.9
PICK1
ENSSSCG00000000114
ENSG00000100151
Protein interacting with PRKCA 1
Tissue enhanced
Detected in all
vagus nerve:
71.9
PIP4K2A
ENSSSCG00000011079
ENSG00000150867
Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha
Tissue enhanced
Detected in all
brain:
67.9
lymphoid tissue:
35.5
PIPOX
ENSSSCG00000017781
ENSG00000179761
Pipecolic acid and sarcosine oxidase
Tissue enhanced
Detected in many
kidney:
38.4
liver:
34.0
retina:
17.6
PISD
ENSSSCG00000010032
ENSG00000241878
Phosphatidylserine decarboxylase proenzyme, mitochondrial
Tissue enhanced
Detected in all
epididymis:
86.6
PKIA
ENSSSCG00000006163
ENSG00000171033
CAMP-dependent protein kinase inhibitor alpha
Tissue enhanced
Detected in many
brain:
40.7
heart:
51.8
pineal gland:
34.9
skeletal muscle:
41.3
PKIG
ENSSSCG00000022998
ENSG00000168734
CAMP-dependent protein kinase inhibitor gamma
Low tissue specificity
Detected in all
PKNOX2
ENSSSCG00000015211
ENSG00000165495
PBX/knotted 1 homeobox 2
Low tissue specificity
Detected in all
PLA2G3
ENSSSCG00000010023
ENSG00000100078
Phospholipase A2 group III
Tissue enhanced
Detected in many
ovary:
26.8
skin:
27.0
PLA2R1
ENSSSCG00000015885
ENSG00000153246
Phospholipase A2 receptor 1
Tissue enhanced
Detected in many
brain:
67.1
epididymis:
32.4
retina:
25.7
PLCL1
ENSSSCG00000016083
ENSG00000115896
Phospholipase C like 1 (inactive)
Tissue enhanced
Detected in many
brain:
48.4
kidney:
32.9
pineal gland:
47.2
PLEKHA1
ENSSSCG00000010702
ENSG00000107679
Pleckstrin homology domain containing A1
Low tissue specificity
Detected in all
PLEKHH1
ENSSSCG00000002292
ENSG00000054690
Pleckstrin homology, MyTH4 and FERM domain containing H1
Tissue enhanced
Detected in many
brain:
75.3
male glands:
20.5
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