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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000033958
ENSG00000198838
Tissue enhanced
Detected in many
brain:
20.7
cervix:
16.3
ductus deferens:
22.3
smooth muscle:
15.7
na
ENSSSCG00000033978
Low tissue specificity
Detected in all
na
ENSSSCG00000034132
Tissue enhanced
Detected in many
adipose tissue:
11.4
brain:
11.2
vagus nerve:
13.7
na
ENSSSCG00000034144
Low tissue specificity
Detected in many
na
ENSSSCG00000034364
ENSG00000128487
Tissue enhanced
Detected in all
brain:
38.0
na
ENSSSCG00000035462
Tissue enhanced
Detected in some
brain:
2.8
mouth:
4.5
synovial tissue:
5.8
na
ENSSSCG00000035477
Tissue enhanced
Detected in all
brain:
25.9
na
ENSSSCG00000035497
ENSG00000122550
Low tissue specificity
Detected in all
na
ENSSSCG00000035652
Tissue enhanced
Detected in many
brain:
39.4
heart:
43.1
male glands:
35.8
na
ENSSSCG00000035890
Group enriched
Detected in some
ovary:
11.6
synovial tissue:
12.7
na
ENSSSCG00000036348
Low tissue specificity
Detected in many
na
ENSSSCG00000036516
Low tissue specificity
Detected in many
na
ENSSSCG00000036531
Tissue enhanced
Detected in all
lens:
63.3
na
ENSSSCG00000036598
Tissue enhanced
Detected in many
ductus deferens:
21.5
male glands:
16.6
na
ENSSSCG00000036643
ENSG00000131381
Low tissue specificity
Detected in all
na
ENSSSCG00000036685
Tissue enhanced
Detected in some
brain:
6.8
dura mater:
4.3
na
ENSSSCG00000036768
ENSG00000275342
Low tissue specificity
Detected in many
na
ENSSSCG00000036826
Tissue enhanced
Detected in many
brain:
18.9
testis:
27.8
na
ENSSSCG00000037037
Tissue enhanced
Detected in many
brain:
15.0
kidney:
10.7
na
ENSSSCG00000037068
Tissue enriched
Detected in some
brain:
56.0
na
ENSSSCG00000037185
ENSG00000213390
Group enriched
Detected in all
brain:
21.0
testis:
22.0
vagus nerve:
83.0
na
ENSSSCG00000037341
Low tissue specificity
Detected in all
na
ENSSSCG00000037479
Low tissue specificity
Detected in all
na
ENSSSCG00000037620
Lithostathine-like precursor
Group enriched
Detected in many
brain:
42.7
small intestine:
47.7
vagus nerve:
18.8
na
ENSSSCG00000037676
Low tissue specificity
Detected in all
na
ENSSSCG00000037718
Tissue enhanced
Detected in many
brain:
14.5
na
ENSSSCG00000037897
Group enriched
Detected in many
brain:
139.9
vagus nerve:
78.2
na
ENSSSCG00000038068
Low tissue specificity
Detected in some
na
ENSSSCG00000038144
Low tissue specificity
Detected in all
na
ENSSSCG00000038394
ENSG00000124374
Tissue enhanced
Detected in all
brain:
64.3
salivary gland:
39.5
na
ENSSSCG00000038811
ENSG00000120162
Tissue enhanced
Detected in many
brain:
54.4
lens:
51.1
na
ENSSSCG00000038960
ENSG00000165102
Low tissue specificity
Detected in all
na
ENSSSCG00000039068
Tissue enhanced
Detected in some
brain:
5.2
pineal gland:
1.4
retina:
1.5
na
ENSSSCG00000039089
ENSG00000153404
Tissue enhanced
Detected in many
liver:
17.2
vagus nerve:
20.2
na
ENSSSCG00000039108
Group enriched
Detected in all
pineal gland:
146.9
retina:
90.5
na
ENSSSCG00000039222
ENSG00000176788
Tissue enriched
Detected in many
lens:
666.9
na
ENSSSCG00000039264
ENSG00000107331
Tissue enhanced
Detected in all
brain:
92.3
na
ENSSSCG00000039783
Low tissue specificity
Detected in all
na
ENSSSCG00000039849
ENSG00000225180
Tissue enhanced
Detected in some
brain:
3.6
synovial tissue:
9.0
na
ENSSSCG00000040108
Tissue enhanced
Detected in many
brain:
16.8
ductus deferens:
17.6
kidney:
18.3
skeletal muscle:
19.1
na
ENSSSCG00000040239
Group enriched
Detected in many
kidney:
27.2
thyroid gland:
54.1
na
ENSSSCG00000040472
Tissue enhanced
Detected in many
cartilage:
9.9
synovial tissue:
14.1
na
ENSSSCG00000040704
Tissue enhanced
Detected in many
cartilage:
7.3
lens:
5.4
na
ENSSSCG00000040769
Low tissue specificity
Detected in all
na
ENSSSCG00000040956
Low tissue specificity
Detected in many
NACC1
ENSSSCG00000013751
ENSG00000160877
Nucleus accumbens associated 1
Low tissue specificity
Detected in all
NAT14
ENSSSCG00000034329
ENSG00000090971
N-acetyltransferase 14 (putative)
Low tissue specificity
Detected in all
NCEH1
ENSSSCG00000011755
ENSG00000144959
Neutral cholesterol ester hydrolase 1
Tissue enhanced
Detected in all
heart:
73.7
NCMAP
ENSSSCG00000003547
ENSG00000184454
Non-compact myelin associated protein
Group enriched
Detected in many
brain:
125.9
vagus nerve:
202.2
NDEL1
ENSSSCG00000017986
ENSG00000166579
Nuclear distribution protein nudE-like 1
Low tissue specificity
Detected in all
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