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Keyword
Chromosome
1
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLLP
ENSSSCG00000002818
ENSG00000102934
Plasmolipin
Group enriched
Detected in many
brain:
142.4
stomach:
38.7
vagus nerve:
61.9
PLXNB3
ENSSSCG00000012780
ENSG00000198753
Plexin B3
Tissue enhanced
Detected in many
skin:
22.6
vagus nerve:
54.8
PMM1
ENSSSCG00000000061
ENSG00000100417
Phosphomannomutase 1
Tissue enhanced
Detected in all
kidney:
67.1
retina:
55.4
PMP2
ENSSSCG00000036441
ENSG00000147588
Myelin P2 protein
Tissue enriched
Detected in some
brain:
159.9
POMGNT2
ENSSSCG00000011293
ENSG00000144647
Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
Tissue enhanced
Detected in all
ovary:
36.1
PPCDC
ENSSSCG00000027478
ENSG00000138621
Phosphopantothenoylcysteine decarboxylase
Low tissue specificity
Detected in all
PPP1R14A
ENSSSCG00000038077
ENSG00000167641
Protein phosphatase 1 regulatory subunit 14A
Tissue enhanced
Detected in all
brain:
87.2
smooth muscle:
60.9
PPP1R16B
ENSSSCG00000007350
ENSG00000101445
Protein phosphatase 1 regulatory subunit 16B
Tissue enhanced
Detected in many
brain:
54.6
PPP1R1B
ENSSSCG00000017498
ENSG00000131771
Protein phosphatase 1 regulatory inhibitor subunit 1B
Tissue enhanced
Detected in many
brain:
198.3
choroid plexus:
83.9
male glands:
76.8
PPP1R1C
ENSSSCG00000036674
ENSG00000150722
Protein phosphatase 1 regulatory inhibitor subunit 1C
Tissue enhanced
Detected in some
brain:
12.5
vagus nerve:
12.2
PPP1R36
ENSSSCG00000002275
ENSG00000165807
Protein phosphatase 1 regulatory subunit 36
Tissue enhanced
Detected in many
choroid plexus:
38.3
testis:
44.9
PPP2R1A
ENSSSCG00000024413
ENSG00000105568
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
Low tissue specificity
Detected in all
PPP2R5D
ENSSSCG00000001654
ENSG00000112640
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform
Low tissue specificity
Detected in all
PREX2
ENSSSCG00000006199
ENSG00000046889
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
Low tissue specificity
Detected in many
PRICKLE1
ENSSSCG00000034491
ENSG00000139174
Prickle planar cell polarity protein 1
Tissue enhanced
Detected in all
lens:
43.2
PRICKLE2
ENSSSCG00000011495
ENSG00000163637
Prickle planar cell polarity protein 2
Tissue enhanced
Detected in many
brain:
33.8
PRKCI
ENSSSCG00000011745
ENSG00000163558
Protein kinase C iota
Low tissue specificity
Detected in all
PRMT2
ENSSSCG00000022575
ENSG00000160310
Protein arginine methyltransferase 2
Low tissue specificity
Detected in all
PROK1
ENSSSCG00000006805
ENSG00000143125
Prokineticin-1 precursor
Tissue enriched
Detected in some
brain:
15.9
PRPH
ENSSSCG00000000195
ENSG00000135406
Peripherin
Tissue enriched
Detected in many
brain:
87.3
PRR18
ENSSSCG00000004021
ENSG00000176381
Proline rich 18
Tissue enhanced
Detected in many
brain:
27.6
epididymis:
10.2
PRR5L
ENSSSCG00000013292
ENSG00000135362
Proline rich 5 like
Tissue enhanced
Detected in many
adipose tissue:
32.8
brain:
35.0
PRRG3
ENSSSCG00000026254
ENSG00000130032
Proline rich and Gla domain 3
Tissue enriched
Detected in many
vagus nerve:
62.4
PRSS35
ENSSSCG00000004452
ENSG00000146250
Serine protease 35
Tissue enhanced
Detected in many
cartilage:
24.8
synovial tissue:
83.6
PTCH1
ENSSSCG00000027312
ENSG00000185920
Patched 1
Tissue enhanced
Detected in all
cartilage:
55.5
vagus nerve:
69.7
PTGDR2
ENSSSCG00000013106
ENSG00000183134
Prostaglandin D2 receptor 2
Tissue enhanced
Detected in many
synovial tissue:
12.4
PTK2
ENSSSCG00000038397
ENSG00000169398
Protein tyrosine kinase 2
Low tissue specificity
Detected in all
PTOV1
ENSSSCG00000003196
ENSG00000104960
Prostate tumor overexpressed 1
Tissue enhanced
Detected in all
lens:
142.9
PTPDC1
ENSSSCG00000021704
ENSG00000158079
Protein tyrosine phosphatase domain containing 1
Tissue enhanced
Detected in all
vagus nerve:
43.6
PTPRK
ENSSSCG00000004209
ENSG00000152894
Protein tyrosine phosphatase, receptor type K
Low tissue specificity
Detected in all
PTPRS
ENSSSCG00000028612
ENSG00000105426
Protein tyrosine phosphatase, receptor type S
Low tissue specificity
Detected in all
PURB
ENSSSCG00000032464
ENSG00000146676
Purine rich element binding protein B
Low tissue specificity
Detected in all
QDPR
ENSSSCG00000034811
ENSG00000151552
Dihydropteridine reductase
Tissue enhanced
Detected in all
brain:
59.6
QKI
ENSSSCG00000004029
ENSG00000112531
Protein quaking
Tissue enhanced
Detected in all
brain:
149.4
vagus nerve:
96.4
RAB1B
ENSSSCG00000012954
ENSG00000174903
Ras-related protein Rab-1B
Tissue enhanced
Detected in all
brain:
108.6
RAB9A
ENSSSCG00000012123
ENSG00000123595
Ras-related protein Rab-9A
Low tissue specificity
Detected in all
RAC3
ENSSSCG00000036973
ENSG00000169750
Rac family small GTPase 3
Low tissue specificity
Detected in all
RALGAPA1
ENSSSCG00000032377
ENSG00000174373
Ral GTPase activating protein catalytic alpha subunit 1
Low tissue specificity
Detected in all
RAMP1
ENSSSCG00000016331
ENSG00000132329
Receptor activity-modifying protein 1
Tissue enhanced
Detected in many
heart:
145.3
skeletal muscle:
82.5
RAP2A
ENSSSCG00000039812
ENSG00000125249
RAP2A, member of RAS oncogene family
Tissue enhanced
Detected in all
brain:
36.8
RAPGEF5
ENSSSCG00000015383
ENSG00000136237
Rap guanine nucleotide exchange factor 5
Tissue enhanced
Detected in all
brain:
67.0
RASD2
ENSSSCG00000031155
ENSG00000100302
RASD family member 2
Tissue enriched
Detected in many
brain:
82.9
RASGEF1C
ENSSSCG00000014011
ENSG00000146090
RasGEF domain family member 1C
Group enriched
Detected in many
brain:
28.4
ductus deferens:
8.1
vagus nerve:
28.2
RASSF10
ENSSSCG00000022060
ENSG00000189431
Ras association domain family member 10
Tissue enhanced
Detected in many
male glands:
27.2
RASSF4
ENSSSCG00000029662
ENSG00000107551
Ras association domain-containing protein 4
Low tissue specificity
Detected in all
RCBTB2
ENSSSCG00000009400
ENSG00000136161
RCC1 and BTB domain containing protein 2
Low tissue specificity
Detected in all
RCOR2
ENSSSCG00000013049
ENSG00000167771
REST corepressor 2
Tissue enhanced
Detected in many
cartilage:
37.3
RET
ENSSSCG00000010199
ENSG00000165731
Ret proto-oncogene
Tissue enriched
Detected in many
brain:
52.4
RFTN2
ENSSSCG00000037483
ENSG00000162944
Raftlin family member 2
Tissue enhanced
Detected in many
brain:
56.8
cartilage:
44.8
RFXAP
ENSSSCG00000009356
ENSG00000133111
Regulatory factor X associated protein
Low tissue specificity
Detected in all
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