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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GLUD1
ENSSSCG00000010368
Glutamate dehydrogenase 1, mitochondrial
Tissue enhanced
Detected in all
brain:
80.8
liver:
52.4
GNA12
ENSSSCG00000032549
ENSG00000146535
G protein subunit alpha 12
Low tissue specificity
Detected in all
GNAQ
ENSSSCG00000033763
ENSG00000156052
Guanine nucleotide-binding protein G(q) subunit alpha
Low tissue specificity
Detected in all
GNG8
ENSSSCG00000022068
ENSG00000167414
G protein subunit gamma 8
Tissue enhanced
Detected in many
brain:
65.1
GPR17
ENSSSCG00000040850
ENSG00000144230
G protein-coupled receptor 17
Tissue enhanced
Detected in all
brain:
22.1
GPR173
ENSSSCG00000024958
ENSG00000184194
G protein-coupled receptor 173
Low tissue specificity
Detected in many
GPR176
ENSSSCG00000004787
ENSG00000166073
G protein-coupled receptor 176
Low tissue specificity
Detected in all
GPR27
ENSSSCG00000036580
ENSG00000170837
G protein-coupled receptor 27
Low tissue specificity
Detected in many
GPR34
ENSSSCG00000022309
ENSG00000171659
G protein-coupled receptor 34
Tissue enhanced
Detected in many
brain:
20.1
GRAMD2B
ENSSSCG00000022402
ENSG00000155324
GRAM domain-containing protein 3
Low tissue specificity
Detected in many
GRB2
ENSSSCG00000017206
ENSG00000177885
Growth factor receptor-bound protein 2
Low tissue specificity
Detected in all
GRIK3
ENSSSCG00000003640
ENSG00000163873
Glutamate ionotropic receptor kainate type subunit 3
Tissue enhanced
Detected in many
brain:
25.7
ductus deferens:
13.2
vagus nerve:
30.2
GRIP2
ENSSSCG00000011599
ENSG00000144596
Glutamate receptor interacting protein 2
Tissue enhanced
Detected in many
adrenal gland:
23.1
brain:
20.1
skeletal muscle:
16.7
GSK3A
ENSSSCG00000003035
ENSG00000105723
Glycogen synthase kinase-3 alpha
Low tissue specificity
Detected in all
GSX1
ENSSSCG00000009313
ENSG00000169840
GS homeobox 1
Group enriched
Detected in some
brain:
3.3
gallbladder:
2.2
mesothelial tissue:
2.2
small intestine:
3.1
stomach:
1.8
GUCY1A2
ENSSSCG00000024613
ENSG00000152402
Guanylate cyclase 1 soluble subunit alpha 2
Tissue enhanced
Detected in many
brain:
28.2
lymphoid tissue:
27.3
GUCY1B1
ENSSSCG00000008870
ENSG00000061918
Guanylate cyclase soluble subunit beta-1
Tissue enhanced
Detected in many
pineal gland:
40.0
HAPLN1
ENSSSCG00000014137
ENSG00000145681
Hyaluronan and proteoglycan link protein 1 precursor
Tissue enriched
Detected in some
cartilage:
121.3
HAPLN2
ENSSSCG00000006478
ENSG00000132702
Hyaluronan and proteoglycan link protein 2
Tissue enriched
Detected in all
brain:
73.3
HARS
ENSSSCG00000014375
ENSG00000170445
Histidyl-tRNA synthetase
Low tissue specificity
Detected in all
HDAC1
ENSSSCG00000003613
ENSG00000116478
Histone deacetylase 1
Tissue enhanced
Detected in all
brain:
107.3
ovary:
54.4
HECW2
ENSSSCG00000016068
ENSG00000138411
E3 ubiquitin-protein ligase HECW2
Low tissue specificity
Detected in many
HHIPL1
ENSSSCG00000022794
ENSG00000182218
HHIP like 1
Tissue enhanced
Detected in many
cartilage:
64.4
HOMER3
ENSSSCG00000013919
ENSG00000051128
Homer scaffolding protein 3
Tissue enhanced
Detected in many
cornea:
25.4
skeletal muscle:
30.3
HOXD1
ENSSSCG00000015986
ENSG00000128645
Homeobox D1
Group enriched
Detected in some
brain:
8.6
kidney:
11.2
male glands:
23.8
HSPA2
ENSSSCG00000002274
ENSG00000126803
Heat shock protein family A (Hsp70) member 2
Tissue enhanced
Detected in many
brain:
72.2
cornea:
50.0
testis:
72.1
vagus nerve:
68.5
HTR7
ENSSSCG00000010459
ENSG00000148680
5-hydroxytryptamine receptor 7
Low tissue specificity
Detected in many
IAPP
ENSSSCG00000000582
ENSG00000121351
Islet amyloid polypeptide
Tissue enhanced
Detected in many
brain:
42.4
choroid plexus:
21.5
upper respiratory system:
20.5
IGSF9B
ENSSSCG00000015255
ENSG00000080854
Immunoglobulin superfamily member 9B
Tissue enhanced
Detected in many
brain:
28.1
cervix:
26.6
IL34
ENSSSCG00000040629
ENSG00000157368
Interleukin-34 precursor
Tissue enhanced
Detected in many
brain:
39.4
vagus nerve:
22.3
IPO9
ENSSSCG00000039843
ENSG00000198700
Importin 9
Low tissue specificity
Detected in all
IQSEC1
ENSSSCG00000027812
ENSG00000144711
IQ motif and Sec7 domain 1
Tissue enhanced
Detected in all
cartilage:
88.9
ITGB8
ENSSSCG00000015375
ENSG00000105855
Integrin beta-8 precursor
Tissue enhanced
Detected in many
brain:
49.6
vagus nerve:
60.5
JOSD2
ENSSSCG00000003217
ENSG00000161677
Josephin-2
Low tissue specificity
Detected in all
KAT2A
ENSSSCG00000017414
ENSG00000108773
Lysine acetyltransferase 2A
Low tissue specificity
Detected in all
KCNB1
ENSSSCG00000007462
ENSG00000158445
Potassium voltage-gated channel subfamily B member 1
Tissue enriched
Detected in many
retina:
78.5
KCNE5
ENSSSCG00000037581
ENSG00000176076
Potassium voltage-gated channel subfamily E regulatory subunit 5
Group enriched
Detected in some
brain:
23.8
lung:
30.1
pineal gland:
11.5
KCNH2
ENSSSCG00000016448
ENSG00000055118
Potassium voltage-gated channel subfamily H member 2
Tissue enhanced
Detected in many
heart:
30.8
KCNJ16
ENSSSCG00000034358
ENSG00000153822
Potassium voltage-gated channel subfamily J member 16
Tissue enhanced
Detected in many
brain:
17.8
kidney:
59.2
KCNK13
ENSSSCG00000002432
ENSG00000152315
Potassium channel subfamily K member 13
Tissue enhanced
Detected in some
adipose tissue:
8.6
kidney:
20.2
testis:
10.5
KCTD2
ENSSSCG00000031958
ENSG00000180901
Potassium channel tetramerization domain containing 2
Low tissue specificity
Detected in all
KCTD7
ENSSSCG00000040985
ENSG00000243335
Potassium channel tetramerization domain containing 7
Tissue enhanced
Detected in all
brain:
37.1
epididymis:
44.2
male glands:
49.0
KIF1B
ENSSSCG00000003401
ENSG00000054523
Kinesin family member 1B
Tissue enhanced
Detected in all
brain:
66.5
KLHDC3
ENSSSCG00000022901
ENSG00000124702
Kelch domain-containing protein 3
Tissue enhanced
Detected in all
testis:
79.7
KLHL4
ENSSSCG00000012467
ENSG00000102271
Kelch like family member 4
Tissue enhanced
Detected in many
brain:
19.6
KLHL5
ENSSSCG00000008787
ENSG00000109790
Kelch like family member 5
Tissue enhanced
Detected in all
choroid plexus:
65.8
KLK6
ENSSSCG00000039984
ENSG00000167755
Kallikrein related peptidase 6
Tissue enriched
Detected in some
brain:
85.6
L1CAM
ENSSSCG00000012787
ENSG00000198910
L1 cell adhesion molecule
Tissue enhanced
Detected in many
ductus deferens:
55.0
kidney:
58.6
vagus nerve:
52.3
LARP6
ENSSSCG00000004974
ENSG00000166173
La ribonucleoprotein domain family member 6
Tissue enhanced
Detected in many
brain:
43.6
synovial tissue:
24.8
LCN9
ENSSSCG00000039855
ENSG00000148386
Lipocalin 9
Tissue enriched
Detected in many
brain:
33.9
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