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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LDLRAD3
ENSSSCG00000013294
ENSG00000179241
Low density lipoprotein receptor class A domain containing 3
Tissue enhanced
Detected in all
cartilage:
58.8
LFNG
ENSSSCG00000007572
ENSG00000106003
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tissue enhanced
Detected in all
male glands:
81.6
LGI4
ENSSSCG00000025126
ENSG00000153902
Leucine rich repeat LGI family member 4
Tissue enhanced
Detected in many
vagus nerve:
94.2
LHPP
ENSSSCG00000010735
ENSG00000107902
Phospholysine phosphohistidine inorganic pyrophosphate phosphatase
Low tissue specificity
Detected in all
LIFR
ENSSSCG00000016850
ENSG00000113594
LIF receptor alpha
Low tissue specificity
Detected in all
LIMCH1
ENSSSCG00000008799
ENSG00000064042
LIM and calponin homology domains 1
Tissue enhanced
Detected in all
vagus nerve:
77.2
LIMK1
ENSSSCG00000030378
ENSG00000106683
LIM domain kinase 1
Tissue enhanced
Detected in all
cartilage:
57.1
LIN28A
ENSSSCG00000003557
Protein lin-28 homolog A
Tissue enhanced
Detected in many
skeletal muscle:
13.5
LINGO1
ENSSSCG00000001872
ENSG00000169783
Leucine rich repeat and Ig domain containing 1
Tissue enhanced
Detected in many
brain:
50.2
LONRF3
ENSSSCG00000012631
ENSG00000175556
LON peptidase N-terminal domain and ring finger 3
Low tissue specificity
Detected in all
LPAR4
ENSSSCG00000012445
ENSG00000147145
Lysophosphatidic acid receptor 4
Tissue enhanced
Detected in many
adipose tissue:
7.1
cartilage:
6.3
lymphoid tissue:
10.4
LRP3
ENSSSCG00000002863
ENSG00000130881
LDL receptor related protein 3
Low tissue specificity
Detected in all
LRP4
ENSSSCG00000013248
ENSG00000134569
LDL receptor related protein 4
Tissue enhanced
Detected in many
skin:
40.7
small intestine:
32.8
LRRC3B
ENSSSCG00000011216
ENSG00000179796
Leucine rich repeat containing 3B
Tissue enhanced
Detected in many
brain:
16.9
male glands:
39.8
LRRC8B
ENSSSCG00000037101
ENSG00000197147
Leucine rich repeat containing 8 VRAC subunit B
Tissue enhanced
Detected in many
brain:
39.9
testis:
57.6
LRSAM1
ENSSSCG00000005613
ENSG00000148356
Leucine rich repeat and sterile alpha motif containing 1
Low tissue specificity
Detected in all
LTC4S
ENSSSCG00000028488
ENSG00000213316
Leukotriene C4 synthase
Tissue enhanced
Detected in many
liver:
56.7
lymphoid tissue:
21.7
LYNX1
ENSSSCG00000031724
ENSG00000180155
Ly6/neurotoxin 1
Tissue enhanced
Detected in many
brain:
43.6
heart:
43.9
MAFG
ENSSSCG00000035253
ENSG00000197063
MAF bZIP transcription factor G
Tissue enhanced
Detected in all
lens:
47.7
MAG
ENSSSCG00000002887
ENSG00000105695
Myelin associated glycoprotein
Tissue enriched
Detected in some
brain:
138.2
MAN2A2
ENSSSCG00000001819
ENSG00000196547
Mannosidase alpha class 2A member 2
Low tissue specificity
Detected in all
MAP1S
ENSSSCG00000013884
ENSG00000130479
Microtubule-associated protein 1S
Low tissue specificity
Detected in all
MAP2K7
ENSSSCG00000013588
ENSG00000076984
Mitogen-activated protein kinase kinase 7
Tissue enhanced
Detected in all
brain:
76.2
MAP4K4
ENSSSCG00000008164
ENSG00000071054
Mitogen-activated protein kinase kinase kinase kinase 4
Tissue enhanced
Detected in all
brain:
85.8
MAPK8IP3
ENSSSCG00000008018
ENSG00000138834
Mitogen-activated protein kinase 8 interacting protein 3
Tissue enhanced
Detected in all
brain:
33.0
MARK1
ENSSSCG00000010825
ENSG00000116141
Microtubule affinity regulating kinase 1
Tissue enhanced
Detected in all
lens:
56.0
MBOAT7
ENSSSCG00000003267
ENSG00000125505
Membrane bound O-acyltransferase domain containing 7
Low tissue specificity
Detected in all
MBP
ENSSSCG00000038767
ENSG00000197971
Myelin basic protein
Tissue enriched
Detected in many
brain:
877.6
MCTP1
ENSSSCG00000025286
ENSG00000175471
Multiple C2 and transmembrane domain containing 1
Tissue enhanced
Detected in many
brain:
56.8
cartilage:
27.5
ME1
ENSSSCG00000004454
ENSG00000065833
Malic enzyme 1
Tissue enhanced
Detected in many
adipose tissue:
36.4
aorta:
33.0
cartilage:
36.0
MED27
ENSSSCG00000005720
ENSG00000160563
Mediator of RNA polymerase II transcription subunit 27
Low tissue specificity
Detected in all
MEF2A
ENSSSCG00000028771
ENSG00000068305
Myocyte-specific enhancer factor 2A isoform 1
Low tissue specificity
Detected in all
MEGF8
ENSSSCG00000003021
ENSG00000105429
Multiple EGF like domains 8
Low tissue specificity
Detected in all
MEIS3
ENSSSCG00000003115
ENSG00000105419
Meis homeobox 3
Tissue enhanced
Detected in many
synovial tissue:
37.9
METTL11B
ENSSSCG00000006281
ENSG00000203740
Alpha N-terminal protein methyltransferase 1B
Tissue enhanced
Detected in many
skeletal muscle:
26.9
MFAP3L
ENSSSCG00000009709
ENSG00000198948
Microfibril associated protein 3 like
Tissue enhanced
Detected in many
brain:
24.9
kidney:
38.9
skin:
23.6
MFSD2A
ENSSSCG00000003669
ENSG00000168389
Major facilitator superfamily domain containing 2A
Low tissue specificity
Detected in all
MFSD6
ENSSSCG00000016052
ENSG00000151690
Major facilitator superfamily domain-containing protein 6
Tissue enhanced
Detected in all
male glands:
49.0
MGAT3
ENSSSCG00000038126
ENSG00000128268
Mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
Tissue enhanced
Detected in many
stomach:
23.8
vagus nerve:
33.5
MID1IP1
ENSSSCG00000025447
ENSG00000165175
Mid1-interacting protein 1
Tissue enhanced
Detected in all
brain:
64.1
MMP16
ENSSSCG00000006132
ENSG00000156103
Matrix metallopeptidase 16
Tissue enhanced
Detected in many
cartilage:
46.5
MRAS
ENSSSCG00000027443
ENSG00000158186
Muscle RAS oncogene homolog
Tissue enhanced
Detected in many
brain:
51.1
MTMR6
ENSSSCG00000035119
ENSG00000139505
Myotubularin related protein 6
Low tissue specificity
Detected in all
MTNR1B
ENSSSCG00000014939
ENSG00000134640
Melatonin receptor 1B
Group enriched
Detected in some
bone marrow:
2.1
brain:
4.6
cartilage:
2.0
endometrium:
1.9
mouth:
5.1
MTSS1L
ENSSSCG00000040037
ENSG00000132613
MTSS1L, I-BAR domain containing
Low tissue specificity
Detected in all
MTUS2
ENSSSCG00000025996
ENSG00000132938
Microtubule associated scaffold protein 2
Tissue enhanced
Detected in many
cornea:
18.9
heart:
34.6
smooth muscle:
32.0
MX1
ENSSSCG00000012077
ENSG00000157601
Interferon-induced GTP-binding protein Mx1
Low tissue specificity
Detected in all
MYO10
ENSSSCG00000016794
ENSG00000145555
Myosin X
Low tissue specificity
Detected in all
MYO9A
ENSSSCG00000004979
ENSG00000066933
Myosin IXA
Low tissue specificity
Detected in all
MYRF
ENSSSCG00000013078
ENSG00000124920
Myelin regulatory factor
Group enriched
Detected in many
adipose tissue:
28.3
brain:
62.5
gallbladder:
23.3
mesothelial tissue:
37.1
stomach:
55.6
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