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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EPHA3
ENSSSCG00000026130
ENSG00000044524
Ephrin type-A receptor 3 precursor
Group enriched
Detected in many
brain:
15.8
cartilage:
41.0
dura mater:
10.8
EPN2
ENSSSCG00000040457
ENSG00000072134
Epsin 2
Low tissue specificity
Detected in all
EPOR
ENSSSCG00000013618
ENSG00000187266
Erythropoietin receptor
Tissue enhanced
Detected in many
brain:
9.0
lymphoid tissue:
10.8
EPS15
ENSSSCG00000003872
ENSG00000085832
Epidermal growth factor receptor pathway substrate 15
Low tissue specificity
Detected in all
EPS15L1
ENSSSCG00000013857
ENSG00000127527
Epidermal growth factor receptor pathway substrate 15 like 1
Low tissue specificity
Detected in all
ETV1
ENSSSCG00000024591
ENSG00000006468
ETS variant 1
Tissue enhanced
Detected in many
brain:
74.2
pituitary gland:
52.5
salivary gland:
97.0
EVI5L
ENSSSCG00000013585
ENSG00000142459
Ecotropic viral integration site 5 like
Low tissue specificity
Detected in all
EXOC6B
ENSSSCG00000008310
ENSG00000144036
Exocyst complex component 6B
Low tissue specificity
Detected in all
EXOSC4
ENSSSCG00000005925
ENSG00000178896
Exosome component 4
Low tissue specificity
Detected in all
FA2H
ENSSSCG00000002718
ENSG00000103089
Fatty acid 2-hydroxylase
Tissue enhanced
Detected in many
brain:
85.7
vagus nerve:
56.0
FAM107A
ENSSSCG00000033189
ENSG00000168309
Protein FAM107A
Tissue enhanced
Detected in all
choroid plexus:
97.7
FAM110B
ENSSSCG00000006240
ENSG00000169122
Family with sequence similarity 110 member B
Tissue enriched
Detected in many
cartilage:
120.4
FAM167A
ENSSSCG00000032852
ENSG00000154319
Family with sequence similarity 167 member A
Tissue enhanced
Detected in many
brain:
21.4
dura mater:
13.9
FAM219A
ENSSSCG00000035455
ENSG00000164970
Family with sequence similarity 219 member A
Tissue enhanced
Detected in all
brain:
31.0
FAM78B
ENSSSCG00000006321
ENSG00000188859
Family with sequence similarity 78 member B
Tissue enhanced
Detected in many
heart:
27.4
ovary:
39.3
FERD3L
ENSSSCG00000015371
ENSG00000146618
Fer3 like bHLH transcription factor
Tissue enriched
Detected in some
brain:
31.2
FGFR2
ENSSSCG00000010698
ENSG00000066468
Fibroblast growth factor receptor 2 precursor
Tissue enhanced
Detected in many
cartilage:
96.5
lens:
85.2
FHOD3
ENSSSCG00000027935
ENSG00000134775
Formin homology 2 domain containing 3
Tissue enhanced
Detected in many
heart:
72.8
FJX1
ENSSSCG00000025588
ENSG00000179431
Four jointed box 1
Low tissue specificity
Detected in many
FKBP8
ENSSSCG00000013905
ENSG00000105701
FK506 binding protein 8
Low tissue specificity
Detected in all
FLT3
ENSSSCG00000009314
ENSG00000122025
Fms related tyrosine kinase 3
Tissue enhanced
Detected in many
brain:
12.1
large intestine:
8.3
FMNL2
ENSSSCG00000015866
ENSG00000157827
Formin like 2
Tissue enhanced
Detected in all
brain:
86.4
FN3KRP
ENSSSCG00000017134
ENSG00000141560
Fructosamine 3 kinase related protein
Low tissue specificity
Detected in all
FOSL1
ENSSSCG00000012967
ENSG00000175592
FOS like 1, AP-1 transcription factor subunit
Tissue enhanced
Detected in all
ovary:
34.3
FOXB1
ENSSSCG00000035244
ENSG00000171956
Forkhead box B1
Tissue enriched
Detected in some
brain:
16.0
FOXB2
ENSSSCG00000005279
ENSG00000204612
Forkhead box B2
Group enriched
Detected in some
brain:
10.5
penis:
8.0
FOXN2
ENSSSCG00000029593
ENSG00000170802
Forkhead box N2
Low tissue specificity
Detected in all
FRMD4A
ENSSSCG00000011056
ENSG00000151474
FERM domain containing 4A
Low tissue specificity
Detected in all
FRS3
ENSSSCG00000001624
ENSG00000137218
Fibroblast growth factor receptor substrate 3
Tissue enhanced
Detected in all
testis:
21.3
FSCN1
ENSSSCG00000007586
ENSG00000075618
Fascin
Tissue enhanced
Detected in many
brain:
55.1
FUT8
ENSSSCG00000002283
ENSG00000033170
Alpha-(1,6)-fucosyltransferase
Tissue enhanced
Detected in all
lymphoid tissue:
51.9
vagus nerve:
63.1
FXYD6
ENSSSCG00000015083
ENSG00000137726
FXYD domain containing ion transport regulator 6
Low tissue specificity
Detected in all
FYN
ENSSSCG00000004421
ENSG00000010810
Tyrosine-protein kinase Fyn
Low tissue specificity
Detected in all
FZR1
ENSSSCG00000013481
ENSG00000105325
Fizzy-related protein homolog
Low tissue specificity
Detected in all
GAL
ENSSSCG00000012883
ENSG00000069482
Galanin peptides preproprotein
Tissue enriched
Detected in some
adrenal gland:
101.7
GAL3ST1
ENSSSCG00000010009
ENSG00000128242
Galactosylceramide sulfotransferase
Tissue enhanced
Detected in many
brain:
27.1
kidney:
20.4
vagus nerve:
23.2
GALC
ENSSSCG00000027865
ENSG00000054983
Galactocerebrosidase
Tissue enhanced
Detected in all
testis:
25.0
GALNT16
ENSSSCG00000002306
ENSG00000100626
Polypeptide N-acetylgalactosaminyltransferase 16
Tissue enhanced
Detected in many
adipose tissue:
31.6
GALNT18
ENSSSCG00000013403
ENSG00000110328
Polypeptide N-acetylgalactosaminyltransferase 18
Tissue enriched
Detected in many
cartilage:
84.5
GAS2L1
ENSSSCG00000025564
ENSG00000185340
GAS2-like protein 1
Low tissue specificity
Detected in all
GAS7
ENSSSCG00000039056
ENSG00000007237
Growth arrest specific 7
Tissue enhanced
Detected in all
vagus nerve:
87.1
GATD1
ENSSSCG00000012846
ENSG00000177225
Glutamine amidotransferase like class 1 domain containing 1
Low tissue specificity
Detected in all
GFRA2
ENSSSCG00000009605
ENSG00000168546
GDNF family receptor alpha 2
Tissue enhanced
Detected in many
brain:
22.6
breast:
12.9
GFRA4
ENSSSCG00000021401
ENSG00000125861
GDNF family receptor alpha 4
Tissue enhanced
Detected in many
mesothelial tissue:
31.0
thyroid gland:
47.1
GIPC1
ENSSSCG00000032842
ENSG00000123159
GIPC PDZ domain containing family member 1
Tissue enhanced
Detected in many
stomach:
33.4
GJA1
ENSSSCG00000004241
ENSG00000152661
Gap junction alpha-1 protein
Tissue enhanced
Detected in many
skin:
144.1
GJA9
ENSSSCG00000003650
ENSG00000131233
Gap junction protein alpha 9
Tissue enhanced
Detected in all
brain:
26.8
GJC2
ENSSSCG00000013989
ENSG00000198835
Gap junction protein gamma 2
Tissue enriched
Detected in some
brain:
58.1
GLDN
ENSSSCG00000004632
ENSG00000186417
Gliomedin
Tissue enhanced
Detected in many
ovary:
40.9
vagus nerve:
53.8
GLRA1
ENSSSCG00000017078
ENSG00000145888
Glycine receptor alpha 1
Group enriched
Detected in some
brain:
33.7
retina:
9.7
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