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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC35E4
ENSSSCG00000010012
ENSG00000100036
Solute carrier family 35 member E4
Tissue enhanced
Detected in many
brain:
23.8
SLC44A1
ENSSSCG00000005425
ENSG00000070214
Solute carrier family 44 member 1
Tissue enhanced
Detected in all
brain:
103.0
SLC48A1
ENSSSCG00000036775
ENSG00000211584
Solute carrier family 48 member 1
Tissue enhanced
Detected in all
brain:
56.5
SLC4A3
ENSSSCG00000022846
ENSG00000114923
Solute carrier family 4 member 3
Tissue enhanced
Detected in many
brain:
29.6
cartilage:
21.2
heart:
43.0
SLC5A7
ENSSSCG00000008140
ENSG00000115665
Solute carrier family 5 member 7
Group enriched
Detected in some
brain:
29.3
pineal gland:
40.3
SLC6A5
ENSSSCG00000037705
ENSG00000165970
Solute carrier family 6 member 5
Tissue enriched
Detected in single
brain:
30.8
SLC6A8
ENSSSCG00000012771
ENSG00000130821
Sodium- and chloride-dependent creatine transporter 1
Low tissue specificity
Detected in many
SLC6A9
ENSSSCG00000039770
ENSG00000196517
Solute carrier family 6 member 9
Tissue enhanced
Detected in many
brain:
47.7
retina:
21.4
SLC8A1
ENSSSCG00000036418
ENSG00000183023
Solute carrier family 8 member A1
Tissue enhanced
Detected in many
heart:
71.3
SLCO1A2
ENSSSCG00000000584
ENSG00000084453
Solute carrier organic anion transporter family member 1A2
Tissue enhanced
Detected in many
brain:
34.3
choroid plexus:
35.1
upper respiratory system:
86.1
SMARCC2
ENSSSCG00000000382
ENSG00000139613
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Low tissue specificity
Detected in all
SMARCD3
ENSSSCG00000016435
ENSG00000082014
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Low tissue specificity
Detected in many
SMOC1
ENSSSCG00000002314
ENSG00000198732
SPARC related modular calcium binding 1
Tissue enhanced
Detected in many
brain:
35.5
cartilage:
36.3
lymphoid tissue:
50.0
SMOX
ENSSSCG00000007140
ENSG00000088826
Spermine oxidase
Tissue enhanced
Detected in many
brain:
33.4
SMYD5
ENSSSCG00000008305
ENSG00000135632
SMYD family member 5
Low tissue specificity
Detected in all
SNN
ENSSSCG00000007897
ENSG00000184602
Stannin
Tissue enhanced
Detected in all
brain:
58.5
lens:
50.1
SOBP
ENSSSCG00000004379
ENSG00000112320
Sine oculis binding protein homolog
Tissue enhanced
Detected in many
cartilage:
62.5
SOGA1
ENSSSCG00000007324
ENSG00000149639
Suppressor of glucose, autophagy associated 1
Tissue enhanced
Detected in all
brain:
46.3
SORCS1
ENSSSCG00000030026
ENSG00000108018
Sortilin related VPS10 domain containing receptor 1
Group enriched
Detected in many
ductus deferens:
55.7
vagus nerve:
78.5
SOWAHA
ENSSSCG00000014286
ENSG00000198944
Sosondowah ankyrin repeat domain family member A
Tissue enhanced
Detected in many
brain:
40.5
kidney:
14.4
SOX10
ENSSSCG00000039315
ENSG00000100146
Transcription factor SOX-10
Tissue enhanced
Detected in many
brain:
61.7
salivary gland:
39.3
vagus nerve:
94.8
SOX14
ENSSSCG00000031721
ENSG00000168875
SRY-box 14
Group enriched
Detected in some
brain:
19.0
breast:
11.7
SOX5
ENSSSCG00000000567
ENSG00000134532
SRY-box 5
Tissue enhanced
Detected in many
cartilage:
117.7
SOX8
ENSSSCG00000037970
ENSG00000005513
SRY-box 8
Tissue enhanced
Detected in many
brain:
46.0
cartilage:
42.6
vagus nerve:
45.0
SOX9
ENSSSCG00000017251
ENSG00000125398
SRY-box 9
Tissue enriched
Detected in many
cartilage:
161.2
SPARCL1
ENSSSCG00000009222
ENSG00000152583
SPARC-like protein 1 precursor
Tissue enhanced
Detected in all
cervix:
136.6
smooth muscle:
134.5
SPP1
ENSSSCG00000009216
ENSG00000118785
Osteopontin
Tissue enhanced
Detected in many
gallbladder:
209.5
SPRED1
ENSSSCG00000039393
ENSG00000166068
Sprouty related EVH1 domain containing 1
Low tissue specificity
Detected in all
SPRY2
ENSSSCG00000009482
ENSG00000136158
Sprouty RTK signaling antagonist 2
Low tissue specificity
Detected in all
SPTAN1
ENSSSCG00000005654
ENSG00000197694
Spectrin alpha, non-erythrocytic 1
Low tissue specificity
Detected in all
SRGAP1
ENSSSCG00000029815
ENSG00000196935
SLIT-ROBO Rho GTPase activating protein 1
Low tissue specificity
Detected in many
SSSCA1
ENSSSCG00000020737
ENSG00000173465
Sjogren syndrome/scleroderma autoantigen 1
Low tissue specificity
Detected in all
STRN
ENSSSCG00000008499
ENSG00000115808
Striatin
Tissue enhanced
Detected in all
brain:
69.8
STUM
ENSSSCG00000024288
ENSG00000203685
Stum, mechanosensory transduction mediator homolog
Tissue enhanced
Detected in many
brain:
49.5
smooth muscle:
22.5
STX6
ENSSSCG00000015539
ENSG00000135823
Syntaxin-6
Low tissue specificity
Detected in all
STXBP6
ENSSSCG00000001977
ENSG00000168952
Syntaxin-binding protein 6
Tissue enhanced
Detected in all
male glands:
64.5
SYNJ2
ENSSSCG00000012315
ENSG00000078269
Synaptojanin 2
Tissue enhanced
Detected in many
brain:
35.4
male glands:
35.5
TBC1D10B
ENSSSCG00000007798
ENSG00000169221
TBC1 domain family member 10B
Low tissue specificity
Detected in all
TCEA2
ENSSSCG00000036804
ENSG00000171703
Transcription elongation factor A2
Tissue enhanced
Detected in all
testis:
70.8
TEF
ENSSSCG00000035152
ENSG00000167074
TEF, PAR bZIP transcription factor
Low tissue specificity
Detected in all
TENM4
ENSSSCG00000014894
ENSG00000149256
Teneurin transmembrane protein 4
Low tissue specificity
Detected in many
TFPT
ENSSSCG00000003262
ENSG00000105619
TCF3 fusion partner
Low tissue specificity
Detected in all
THRA
ENSSSCG00000035969
ENSG00000126351
Thyroid hormone receptor alpha
Low tissue specificity
Detected in all
THSD7A
ENSSSCG00000015350
ENSG00000005108
Thrombospondin type 1 domain containing 7A
Tissue enhanced
Detected in many
brain:
39.6
THY1
ENSSSCG00000032330
ENSG00000154096
Thy-1 membrane glycoprotein precursor
Tissue enhanced
Detected in many
brain:
89.5
THYN1
ENSSSCG00000028149
ENSG00000151500
Thymocyte nuclear protein 1
Low tissue specificity
Detected in all
TK2
ENSSSCG00000038053
ENSG00000166548
Thymidine kinase 2, mitochondrial
Low tissue specificity
Detected in all
TLL2
ENSSSCG00000010507
ENSG00000095587
Tolloid like 2
Tissue enhanced
Detected in many
brain:
16.1
TLN2
ENSSSCG00000024088
ENSG00000171914
Talin 2
Low tissue specificity
Detected in all
TM6SF1
ENSSSCG00000001800
ENSG00000136404
Transmembrane 6 superfamily member 1
Low tissue specificity
Detected in many
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