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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMC7
ENSSSCG00000007866
ENSG00000170537
Transmembrane channel like 7
Tissue enhanced
Detected in all
brain:
53.1
testis:
30.0
TMEM100
ENSSSCG00000017607
ENSG00000166292
Transmembrane protein 100
Tissue enhanced
Detected in many
dura mater:
47.2
TMEM117
ENSSSCG00000000801
ENSG00000139173
Transmembrane protein 117
Group enriched
Detected in many
brain:
38.1
lens:
64.5
TMEM127
ENSSSCG00000034105
ENSG00000135956
Transmembrane protein 127
Low tissue specificity
Detected in all
TMEM144
ENSSSCG00000008874
ENSG00000164124
Transmembrane protein 144
Tissue enriched
Detected in many
brain:
46.2
TMEM150C
ENSSSCG00000026729
ENSG00000249242
Transmembrane protein 150C
Tissue enriched
Detected in all
epididymis:
107.5
TMEM158
ENSSSCG00000030575
ENSG00000249992
Transmembrane protein 158 (gene/pseudogene)
Tissue enhanced
Detected in many
brain:
30.7
TMEM237
ENSSSCG00000035161
ENSG00000155755
Transmembrane protein 237
Tissue enriched
Detected in many
retina:
47.9
TMEM26
ENSSSCG00000023525
ENSG00000196932
Transmembrane protein 26
Tissue enhanced
Detected in some
brain:
24.4
ovary:
48.7
TMEM88B
ENSSSCG00000034013
ENSG00000205116
Transmembrane protein 88B
Tissue enriched
Detected in all
brain:
47.0
TMEM8B
ENSSSCG00000005325
ENSG00000137103
Transmembrane protein 8B
Tissue enhanced
Detected in all
brain:
32.6
TMOD2
ENSSSCG00000004628
ENSG00000128872
Tropomodulin 2
Group enriched
Detected in many
brain:
53.7
lens:
33.7
pineal gland:
14.7
vagus nerve:
17.7
TMPRSS5
ENSSSCG00000015049
ENSG00000166682
Transmembrane serine protease 5
Tissue enhanced
Detected in many
fallopian tube:
15.9
vagus nerve:
41.6
TMTC1
ENSSSCG00000027447
ENSG00000133687
Transmembrane and tetratricopeptide repeat containing 1
Tissue enhanced
Detected in many
cartilage:
53.6
TMTC2
ENSSSCG00000024065
ENSG00000179104
Transmembrane and tetratricopeptide repeat containing 2
Low tissue specificity
Detected in many
TNFAIP8L3
ENSSSCG00000031794
ENSG00000183578
TNF alpha induced protein 8 like 3
Tissue enhanced
Detected in many
cervix:
17.7
TNFRSF11B
ENSSSCG00000027762
ENSG00000164761
TNF receptor superfamily member 11b
Tissue enhanced
Detected in many
cartilage:
27.5
dura mater:
43.7
TNK2
ENSSSCG00000011849
ENSG00000061938
Tyrosine kinase non receptor 2
Low tissue specificity
Detected in all
TP53BP2
ENSSSCG00000010894
ENSG00000143514
Tumor protein p53 binding protein 2
Low tissue specificity
Detected in all
TP53INP2
ENSSSCG00000022099
ENSG00000078804
Tumor protein p53 inducible nuclear protein 2
Tissue enhanced
Detected in many
adrenal gland:
54.2
brain:
119.3
TRAK2
ENSSSCG00000016104
ENSG00000115993
Trafficking kinesin protein 2
Tissue enhanced
Detected in all
brain:
85.0
TRIL
ENSSSCG00000016689
ENSG00000255690
TLR4 interactor with leucine rich repeats
Low tissue specificity
Detected in many
TRIM59
ENSSSCG00000011732
ENSG00000213186
Tripartite motif containing 59
Tissue enriched
Detected in all
brain:
46.5
TRPM8
ENSSSCG00000016314
ENSG00000144481
Transient receptor potential cation channel subfamily M member 8
Group enriched
Detected in some
kidney:
14.6
liver:
28.1
TSC22D1
ENSSSCG00000009422
ENSG00000102804
TSC22 domain family member 1
Low tissue specificity
Detected in all
TSC22D4
ENSSSCG00000025164
ENSG00000166925
TSC22 domain family member 4
Tissue enhanced
Detected in all
brain:
63.6
TSPYL2
ENSSSCG00000012323
ENSG00000184205
TSPY like 2
Tissue enhanced
Detected in all
epididymis:
63.9
TTLL7
ENSSSCG00000003760
ENSG00000137941
Tubulin tyrosine ligase like 7
Tissue enhanced
Detected in many
brain:
61.5
smooth muscle:
23.3
TTYH2
ENSSSCG00000017238
ENSG00000141540
Tweety family member 2
Tissue enhanced
Detected in all
brain:
98.3
TUSC1
ENSSSCG00000005128
ENSG00000198680
Tumor suppressor candidate 1
Low tissue specificity
Detected in all
UBE2O
ENSSSCG00000029901
ENSG00000175931
Ubiquitin conjugating enzyme E2 O
Low tissue specificity
Detected in all
UBQLN4
ENSSSCG00000006500
ENSG00000160803
Ubiquilin 4
Low tissue specificity
Detected in all
UCMA
ENSSSCG00000038864
ENSG00000165623
Upper zone of growth plate and cartilage matrix associated
Tissue enriched
Detected in some
brain:
30.6
UGT8
ENSSSCG00000031904
ENSG00000174607
2-hydroxyacylsphingosine 1-beta-galactosyltransferase
Group enriched
Detected in many
brain:
109.4
vagus nerve:
33.2
UNC5B
ENSSSCG00000010276
ENSG00000107731
Netrin receptor UNC5B precursor
Tissue enhanced
Detected in many
male glands:
52.4
URGCP
ENSSSCG00000040519
ENSG00000106608
Upregulator of cell proliferation
Low tissue specificity
Detected in all
USP11
ENSSSCG00000012273
ENSG00000102226
Ubiquitin specific peptidase 11
Low tissue specificity
Detected in all
USP31
ENSSSCG00000030424
ENSG00000103404
Ubiquitin specific peptidase 31
Tissue enhanced
Detected in all
brain:
29.7
UST
ENSSSCG00000028974
ENSG00000111962
Uronyl 2-sulfotransferase
Tissue enhanced
Detected in many
lymphoid tissue:
41.2
VARS2
ENSSSCG00000001384
ENSG00000137411
Valine--tRNA ligase, mitochondrial precursor
Low tissue specificity
Detected in all
VASH1
ENSSSCG00000002389
ENSG00000071246
Vasohibin 1
Tissue enhanced
Detected in all
lymphoid tissue:
28.1
VCAN
ENSSSCG00000014136
ENSG00000038427
Versican core protein precursor
Tissue enhanced
Detected in all
ovary:
100.4
VPS52
ENSSSCG00000001501
ENSG00000223501
VPS52, GARP complex subunit
Low tissue specificity
Detected in all
WARS
ENSSSCG00000002516
ENSG00000140105
Tryptophanyl-tRNA synthetase
Tissue enhanced
Detected in all
stomach:
76.5
WASF3
ENSSSCG00000009300
ENSG00000132970
WAS protein family member 3
Low tissue specificity
Detected in all
WNK2
ENSSSCG00000034154
ENSG00000165238
WNK lysine deficient protein kinase 2
Tissue enhanced
Detected in many
male glands:
78.4
WNK4
ENSSSCG00000017387
ENSG00000126562
WNK lysine deficient protein kinase 4
Tissue enhanced
Detected in many
cartilage:
36.2
kidney:
46.7
penis:
29.3
vagus nerve:
36.8
YPEL3
ENSSSCG00000035430
ENSG00000090238
Yippee like 3
Low tissue specificity
Detected in all
ZDHHC14
ENSSSCG00000035027
ENSG00000175048
Zinc finger DHHC-type containing 14
Tissue enhanced
Detected in many
brain:
33.6
stomach:
22.1
ZDHHC9
ENSSSCG00000012653
ENSG00000188706
Zinc finger DHHC-type containing 9
Tissue enhanced
Detected in all
brain:
74.7
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