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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RGMA
ENSSSCG00000002267
ENSG00000182175
Repulsive guidance molecule BMP co-receptor a
Low tissue specificity
Detected in many
RGS6
ENSSSCG00000033093
ENSG00000182732
Regulator of G protein signaling 6
Tissue enhanced
Detected in many
brain:
18.1
heart:
15.1
male glands:
31.5
RHBDL2
ENSSSCG00000003651
ENSG00000158315
Rhomboid-related protein 2
Tissue enriched
Detected in all
brain:
54.9
RHBDL3
ENSSSCG00000017734
ENSG00000141314
Rhomboid like 3
Tissue enhanced
Detected in many
retina:
38.4
vagus nerve:
17.0
RHOU
ENSSSCG00000024418
ENSG00000116574
Ras homolog family member U
Tissue enhanced
Detected in many
brain:
48.7
male glands:
31.4
RICTOR
ENSSSCG00000016853
ENSG00000164327
RPTOR independent companion of MTOR complex 2
Low tissue specificity
Detected in all
RNF24
ENSSSCG00000035181
ENSG00000101236
Ring finger protein 24
Tissue enhanced
Detected in all
cartilage:
37.0
ROBO1
ENSSSCG00000012001
ENSG00000169855
Roundabout guidance receptor 1
Tissue enhanced
Detected in many
brain:
33.2
cartilage:
33.8
ovary:
33.1
RPS6KA2
ENSSSCG00000004022
ENSG00000071242
Ribosomal protein S6 kinase A2
Tissue enhanced
Detected in many
brain:
32.2
lens:
49.4
RPUSD3
ENSSSCG00000011555
ENSG00000156990
RNA pseudouridylate synthase domain containing 3
Low tissue specificity
Detected in all
RTKN
ENSSSCG00000008281
ENSG00000114993
Rhotekin
Tissue enhanced
Detected in many
brain:
53.4
vagus nerve:
52.5
RTN4
ENSSSCG00000032007
ENSG00000115310
Reticulon-4
Low tissue specificity
Detected in all
RUSC1
ENSSSCG00000006511
ENSG00000160753
RUN and SH3 domain containing 1
Low tissue specificity
Detected in all
RXRG
ENSSSCG00000006328
ENSG00000143171
Retinoic acid receptor RXR-gamma
Tissue enhanced
Detected in all
brain:
29.0
pineal gland:
61.5
RYR2
ENSSSCG00000010142
ENSG00000198626
Ryanodine receptor 2
Tissue enriched
Detected in many
heart:
143.0
S100A14
ENSSSCG00000006582
ENSG00000189334
Protein S100-A14
Tissue enhanced
Detected in many
brain:
42.6
cornea:
41.1
mouth:
54.2
stomach:
44.6
S100A3
ENSSSCG00000006579
ENSG00000188015
S100 calcium binding protein A3
Tissue enriched
Detected in some
skin:
126.2
S1PR1
ENSSSCG00000029849
ENSG00000170989
Sphingosine-1-phosphate receptor 1
Low tissue specificity
Detected in all
S1PR5
ENSSSCG00000028460
ENSG00000180739
Sphingosine 1-phosphate receptor 5
Tissue enhanced
Detected in many
brain:
36.7
skin:
14.4
SAC3D1
ENSSSCG00000013011
ENSG00000168061
SAC3 domain containing 1
Low tissue specificity
Detected in all
SCN1B
ENSSSCG00000023267
ENSG00000105711
Sodium voltage-gated channel beta subunit 1
Group enriched
Detected in many
brain:
99.0
skeletal muscle:
52.5
SDC3
ENSSSCG00000003592
ENSG00000162512
Syndecan 3
Tissue enhanced
Detected in all
brain:
64.9
cartilage:
42.7
SDK2
ENSSSCG00000017244
ENSG00000069188
Sidekick cell adhesion molecule 2
Tissue enhanced
Detected in many
cartilage:
46.4
SEC14L5
ENSSSCG00000007926
ENSG00000103184
SEC14 like lipid binding 5
Tissue enhanced
Detected in many
brain:
37.6
SECISBP2L
ENSSSCG00000004653
ENSG00000138593
Selenocysteine insertion sequence-binding protein 2-like
Tissue enhanced
Detected in all
brain:
69.9
vagus nerve:
89.6
SEMA4D
ENSSSCG00000009584
ENSG00000187764
Semaphorin 4D
Tissue enhanced
Detected in all
brain:
61.2
SEMA6D
ENSSSCG00000004663
ENSG00000137872
Semaphorin 6D
Low tissue specificity
Detected in all
SEPT8
ENSSSCG00000014285
ENSG00000164402
Septin 8
Tissue enhanced
Detected in all
brain:
77.3
SERINC5
ENSSSCG00000014119
ENSG00000164300
Serine incorporator 5
Low tissue specificity
Detected in all
SERPINE2
ENSSSCG00000016233
ENSG00000135919
Glia-derived nexin precursor
Group enriched
Detected in many
cartilage:
193.9
ovary:
110.5
SETD3
ENSSSCG00000002508
ENSG00000183576
SET domain containing 3
Low tissue specificity
Detected in all
SGK3
ENSSSCG00000006206
ENSG00000104205
Serum/glucocorticoid regulated kinase family member 3
Tissue enhanced
Detected in all
choroid plexus:
38.0
SH2D4B
ENSSSCG00000010342
ENSG00000178217
SH2 domain containing 4B
Tissue enhanced
Detected in many
brain:
8.5
lymphoid tissue:
6.5
SH3GLB2
ENSSSCG00000005668
ENSG00000148341
SH3 domain containing GRB2 like, endophilin B2
Low tissue specificity
Detected in all
SH3TC2
ENSSSCG00000023279
ENSG00000169247
SH3 domain and tetratricopeptide repeats 2
Tissue enhanced
Detected in many
brain:
24.0
vagus nerve:
47.3
SHC2
ENSSSCG00000040083
ENSG00000129946
SHC adaptor protein 2
Tissue enhanced
Detected in many
brain:
15.8
cervix:
15.0
SHISA4
ENSSSCG00000031981
ENSG00000198892
Shisa family member 4
Tissue enhanced
Detected in many
brain:
43.2
skeletal muscle:
124.2
SHISA8
ENSSSCG00000035755
ENSG00000234965
Shisa family member 8
Tissue enriched
Detected in many
vagus nerve:
85.6
SHISAL2B
ENSSSCG00000024514
ENSG00000145642
Shisa like 2B
Tissue enhanced
Detected in many
brain:
24.9
skin:
12.0
SIK3
ENSSSCG00000015071
ENSG00000160584
SIK family kinase 3
Low tissue specificity
Detected in all
SIRT2
ENSSSCG00000026794
ENSG00000068903
NAD-dependent protein deacetylase sirtuin-2
Tissue enhanced
Detected in all
brain:
91.8
SLC10A4
ENSSSCG00000008823
ENSG00000145248
Solute carrier family 10 member 4
Group enriched
Detected in some
brain:
36.6
pineal gland:
14.4
SLC13A3
ENSSSCG00000035906
ENSG00000158296
Solute carrier family 13 member 3
Tissue enriched
Detected in some
kidney:
93.6
SLC16A8
ENSSSCG00000000113
ENSG00000100156
Solute carrier family 16 member 8
Low tissue specificity
Detected in many
SLC18A3
ENSSSCG00000022274
ENSG00000187714
Solute carrier family 18 member A3
Tissue enriched
Detected in some
brain:
56.8
SLC26A7
ENSSSCG00000006116
ENSG00000147606
Solute carrier family 26 member 7
Tissue enhanced
Detected in many
kidney:
46.2
male glands:
25.2
thyroid gland:
79.4
SLC27A1
ENSSSCG00000013879
ENSG00000130304
Long-chain fatty acid transport protein 1 precursor
Tissue enhanced
Detected in all
male glands:
48.1
SLC2A5
ENSSSCG00000039651
ENSG00000142583
Solute carrier family 2 member 5
Tissue enhanced
Detected in many
cornea:
20.4
epididymis:
45.8
testis:
25.5
SLC2A6
ENSSSCG00000024166
ENSG00000160326
Solute carrier family 2 member 6
Tissue enhanced
Detected in many
brain:
17.6
lymphoid tissue:
13.1
stomach:
18.4
SLC2A9
ENSSSCG00000031700
ENSG00000109667
Solute carrier family 2 member 9
Tissue enhanced
Detected in all
synovial tissue:
17.6
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