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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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826 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HS3ST5
ENSSSCG00000004433
ENSG00000249853
Heparan sulfate-glucosamine 3-sulfotransferase 5
Tissue enhanced
Detected in many
adrenal gland:
11.0
brain:
21.2
ductus deferens:
14.5
kidney:
13.4
HSBP1L1
ENSSSCG00000005778
ENSG00000226742
Heat shock factor-binding protein 1-like protein 1
Tissue enhanced
Detected in many
pineal gland:
15.3
smooth muscle:
15.4
ID1
ENSSSCG00000037016
ENSG00000125968
DNA-binding protein inhibitor ID-1
Tissue enriched
Detected in all
brain:
58.7
ID4
ENSSSCG00000024312
ENSG00000172201
DNA-binding protein inhibitor ID-4
Tissue enhanced
Detected in many
ductus deferens:
49.5
IFI27L2
ENSSSCG00000002472
ENSG00000119632
Interferon alpha inducible protein 27 like 2
Low tissue specificity
Detected in all
IFT57
ENSSSCG00000011941
ENSG00000114446
Intraflagellar transport 57
Tissue enhanced
Detected in all
lens:
117.6
IGDCC3
ENSSSCG00000004932
ENSG00000174498
Immunoglobulin superfamily DCC subclass member 3
Tissue enhanced
Detected in many
brain:
12.9
lymphoid tissue:
13.1
IGSF11
ENSSSCG00000011906
ENSG00000144847
Immunoglobulin superfamily member 11
Tissue enhanced
Detected in many
brain:
36.0
retina:
13.2
vagus nerve:
14.8
IGSF8
ENSSSCG00000006392
ENSG00000162729
Immunoglobulin superfamily member 8
Tissue enhanced
Detected in all
brain:
37.3
IL1RAPL2
ENSSSCG00000012545
ENSG00000189108
Interleukin 1 receptor accessory protein like 2
Tissue enhanced
Detected in some
brain:
10.6
vagus nerve:
6.3
IL9
ENSSSCG00000025818
ENSG00000145839
Interleukin-9 precursor
Tissue enhanced
Detected in some
brain:
2.6
kidney:
3.2
pineal gland:
9.0
retina:
3.1
IP6K1
ENSSSCG00000011390
ENSG00000176095
Inositol hexakisphosphate kinase 1
Low tissue specificity
Detected in all
IPPK
ENSSSCG00000030204
ENSG00000127080
Inositol-pentakisphosphate 2-kinase
Low tissue specificity
Detected in all
IRGQ
ENSSSCG00000030637
ENSG00000167378
Immunity related GTPase Q
Low tissue specificity
Detected in all
IRX6
ENSSSCG00000002830
ENSG00000159387
Iroquois homeobox 6
Group enriched
Detected in some
brain:
12.4
heart:
9.6
kidney:
5.1
retina:
9.1
ISCA2
ENSSSCG00000002367
ENSG00000165898
Iron-sulfur cluster assembly 2
Tissue enhanced
Detected in all
epididymis:
41.7
JAKMIP2
ENSSSCG00000014420
ENSG00000176049
Janus kinase and microtubule interacting protein 2
Tissue enhanced
Detected in some
brain:
19.6
cartilage:
9.9
pineal gland:
10.1
pituitary gland:
7.9
JAKMIP3
ENSSSCG00000024633
ENSG00000188385
Janus kinase and microtubule interacting protein 3
Tissue enriched
Detected in many
brain:
19.2
KATNAL1
ENSSSCG00000009326
ENSG00000102781
Katanin catalytic subunit A1 like 1
Low tissue specificity
Detected in all
KBTBD11
ENSSSCG00000029796
ENSG00000176595
Kelch repeat and BTB domain containing 11
Tissue enhanced
Detected in many
brain:
24.7
kidney:
13.9
KCNA1
ENSSSCG00000000716
ENSG00000111262
Potassium voltage-gated channel subfamily A member 1
Group enriched
Detected in some
adrenal gland:
64.8
brain:
42.6
KCNA6
ENSSSCG00000000717
ENSG00000151079
Potassium voltage-gated channel subfamily A member 6
Tissue enriched
Detected in some
brain:
63.3
KCNG4
ENSSSCG00000030446
ENSG00000168418
Potassium voltage-gated channel modifier subfamily G member 4
Group enriched
Detected in some
brain:
7.1
pineal gland:
12.8
retina:
15.8
KCNIP1
ENSSSCG00000017003
ENSG00000182132
Kv channel-interacting protein 1
Tissue enhanced
Detected in all
brain:
38.8
KCNJ10
ENSSSCG00000031858
ENSG00000177807
Potassium voltage-gated channel subfamily J member 10
Tissue enriched
Detected in some
brain:
60.8
KCNJ5
ENSSSCG00000021573
ENSG00000120457
G protein-activated inward rectifier potassium channel 4
Tissue enhanced
Detected in many
adrenal gland:
36.1
epididymis:
18.1
heart:
66.5
KCNK10
ENSSSCG00000002423
ENSG00000100433
Potassium two pore domain channel subfamily K member 10
Tissue enhanced
Detected in many
brain:
24.4
cornea:
12.3
stomach:
23.1
KCNN2
ENSSSCG00000014213
ENSG00000080709
Potassium calcium-activated channel subfamily N member 2
Tissue enhanced
Detected in many
adrenal gland:
33.7
liver:
43.1
male glands:
49.4
KCTD21
ENSSSCG00000033506
ENSG00000188997
Potassium channel tetramerization domain containing 21
Tissue enhanced
Detected in many
brain:
21.5
lens:
17.9
KCTD4
ENSSSCG00000022868
ENSG00000180332
Potassium channel tetramerization domain containing 4
Tissue enhanced
Detected in all
brain:
22.8
vagus nerve:
19.1
KIAA0408
ENSSSCG00000004215
ENSG00000189367
KIAA0408
Tissue enhanced
Detected in many
brain:
27.5
skeletal muscle:
37.5
smooth muscle:
24.3
KIAA0895
ENSSSCG00000016659
ENSG00000164542
KIAA0895
Tissue enhanced
Detected in many
testis:
31.2
KIAA1147
ENSSSCG00000016491
ENSG00000257093
KIAA1147
Tissue enhanced
Detected in all
lens:
37.3
KIAA1211
ENSSSCG00000008903
ENSG00000109265
KIAA1211
Tissue enriched
Detected in many
epididymis:
89.8
KIAA1324L
ENSSSCG00000015394
ENSG00000164659
KIAA1324 like
Tissue enhanced
Detected in many
brain:
27.0
heart:
18.0
KIAA1841
ENSSSCG00000008386
ENSG00000162929
KIAA1841
Tissue enhanced
Detected in all
brain:
17.0
pineal gland:
17.1
KIDINS220
ENSSSCG00000008644
ENSG00000134313
Kinase D interacting substrate 220
Low tissue specificity
Detected in all
KIF21A
ENSSSCG00000000779
ENSG00000139116
Kinesin family member 21A
Tissue enhanced
Detected in many
brain:
42.1
lens:
29.2
retina:
31.1
KIF26B
ENSSSCG00000010879
ENSG00000162849
Kinesin family member 26B
Tissue enhanced
Detected in many
heart:
31.5
kidney:
19.4
KIF3A
ENSSSCG00000014283
ENSG00000131437
Kinesin family member 3A
Tissue enhanced
Detected in all
brain:
31.4
KIF3C
ENSSSCG00000008574
ENSG00000084731
Kinesin family member 3C
Tissue enhanced
Detected in all
brain:
31.5
KIF5C
ENSSSCG00000022919
ENSG00000168280
Kinesin family member 5C
Tissue enhanced
Detected in some
brain:
58.3
lens:
28.9
pituitary gland:
16.0
KIFAP3
ENSSSCG00000006282
ENSG00000075945
Kinesin associated protein 3
Tissue enhanced
Detected in all
brain:
45.8
pineal gland:
29.6
KLHL13
ENSSSCG00000012637
ENSG00000003096
Kelch like family member 13
Tissue enhanced
Detected in many
brain:
33.2
epididymis:
38.4
KLHL26
ENSSSCG00000013913
ENSG00000167487
Kelch like family member 26
Low tissue specificity
Detected in all
KLHL32
ENSSSCG00000027002
ENSG00000186231
Kelch like family member 32
Tissue enhanced
Detected in all
male glands:
33.0
KLK4
ENSSSCG00000023074
ENSG00000167749
Kallikrein-4 precursor
Group enriched
Detected in some
brain:
7.4
testis:
24.7
L3MBTL1
ENSSSCG00000007365
ENSG00000185513
L3MBTL1, histone methyl-lysine binding protein
Tissue enhanced
Detected in many
brain:
14.6
epididymis:
17.9
L3MBTL4
ENSSSCG00000035553
ENSG00000154655
L3MBTL4, histone methyl-lysine binding protein
Tissue enhanced
Detected in many
lens:
9.7
pituitary gland:
9.9
salivary gland:
9.3
LAMA1
ENSSSCG00000034767
ENSG00000101680
Laminin subunit alpha 1
Group enriched
Detected in many
lens:
68.3
ovary:
34.5
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