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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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826 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DNAJC16
ENSSSCG00000003464
ENSG00000116138
DnaJ heat shock protein family (Hsp40) member C16
Low tissue specificity
Detected in all
DNAJC18
ENSSSCG00000014356
ENSG00000170464
DnaJ heat shock protein family (Hsp40) member C18
Low tissue specificity
Detected in all
DNAJC27
ENSSSCG00000008577
ENSG00000115137
DnaJ heat shock protein family (Hsp40) member C27
Tissue enhanced
Detected in many
brain:
15.9
testis:
14.4
DNAJC5B
ENSSSCG00000006217
ENSG00000147570
DnaJ homolog subfamily C member 5B
Tissue enriched
Detected in some
testis:
60.2
DNAJC6
ENSSSCG00000003807
ENSG00000116675
Putative tyrosine-protein phosphatase auxilin
Tissue enhanced
Detected in many
brain:
54.6
lens:
18.8
pineal gland:
28.1
DNAL1
ENSSSCG00000039469
ENSG00000119661
Dynein axonemal light chain 1
Tissue enhanced
Detected in all
pineal gland:
29.7
DNM3
ENSSSCG00000038958
ENSG00000197959
Dynamin 3
Tissue enhanced
Detected in many
brain:
51.4
cartilage:
44.9
DOCK7
ENSSSCG00000003818
ENSG00000116641
Dedicator of cytokinesis 7
Low tissue specificity
Detected in all
DPY19L3
ENSSSCG00000022521
ENSG00000178904
Dpy-19 like C-mannosyltransferase 3
Low tissue specificity
Detected in all
DPYSL5
ENSSSCG00000008560
ENSG00000157851
Dihydropyrimidinase like 5
Tissue enriched
Detected in some
brain:
45.2
DSTYK
ENSSSCG00000015286
ENSG00000133059
Dual serine/threonine and tyrosine protein kinase
Low tissue specificity
Detected in all
DUSP19
ENSSSCG00000016020
ENSG00000162999
Dual specificity phosphatase 19
Low tissue specificity
Detected in all
DYNC1I1
ENSSSCG00000015335
ENSG00000158560
Dynein cytoplasmic 1 intermediate chain 1
Group enriched
Detected in many
brain:
30.5
lens:
119.7
EDIL3
ENSSSCG00000026780
ENSG00000164176
EGF like repeats and discoidin domains 3
Group enriched
Detected in some
brain:
55.8
cartilage:
87.5
EFCAB2
ENSSSCG00000010878
ENSG00000203666
EF-hand calcium binding domain 2
Tissue enhanced
Detected in all
testis:
30.8
ELAVL3
ENSSSCG00000013617
ENSG00000196361
ELAV like RNA binding protein 3
Tissue enriched
Detected in some
brain:
43.3
ELOVL2
ENSSSCG00000001045
ENSG00000197977
ELOVL fatty acid elongase 2
Group enriched
Detected in many
brain:
34.3
pineal gland:
12.8
retina:
14.3
testis:
19.2
vagus nerve:
25.6
EML2
ENSSSCG00000038229
ENSG00000125746
Echinoderm microtubule associated protein like 2
Tissue enhanced
Detected in many
brain:
32.8
ENHO
ENSSSCG00000027428
ENSG00000168913
Adropin
Tissue enhanced
Detected in many
brain:
39.0
vagus nerve:
34.5
EPB41L3
ENSSSCG00000003687
ENSG00000082397
Erythrocyte membrane protein band 4.1 like 3
Tissue enhanced
Detected in all
kidney:
67.4
EPHB1
ENSSSCG00000024492
ENSG00000154928
EPH receptor B1
Tissue enhanced
Detected in many
brain:
27.2
cartilage:
19.8
EPHX2
ENSSSCG00000009666
ENSG00000120915
Bifunctional epoxide hydrolase 2
Tissue enhanced
Detected in all
liver:
42.4
EPM2AIP1
ENSSSCG00000030247
ENSG00000178567
EPM2A interacting protein 1
Low tissue specificity
Detected in all
ERMN
ENSSSCG00000034503
ENSG00000136541
Ermin
Tissue enriched
Detected in some
brain:
159.1
ETNPPL
ENSSSCG00000009144
ENSG00000164089
Ethanolamine-phosphate phospho-lyase
Tissue enhanced
Detected in some
brain:
32.5
liver:
20.4
lymphoid tissue:
10.6
EVI5
ENSSSCG00000006901
ENSG00000067208
Ecotropic viral integration site 5
Low tissue specificity
Detected in all
EXD2
ENSSSCG00000002305
ENSG00000081177
Exonuclease 3'-5' domain containing 2
Low tissue specificity
Detected in all
EXTL2
ENSSSCG00000006861
ENSG00000162694
Exostosin-like 2
Tissue enhanced
Detected in many
brain:
20.5
testis:
17.5
FAAH
ENSSSCG00000003901
ENSG00000117480
Fatty-acid amide hydrolase 1
Tissue enhanced
Detected in many
choroid plexus:
31.3
FABP7
ENSSSCG00000004234
ENSG00000164434
Fatty acid-binding protein, brain
Group enriched
Detected in some
brain:
67.6
pineal gland:
37.3
FADS1
ENSSSCG00000024015
ENSG00000149485
Fatty acid desaturase 1
Low tissue specificity
Detected in all
FADS2
ENSSSCG00000013072
ENSG00000134824
Fatty acid desaturase 2
Tissue enhanced
Detected in all
adrenal gland:
119.4
brain:
87.0
FAIM2
ENSSSCG00000000206
ENSG00000135472
Fas apoptotic inhibitory molecule 2
Tissue enhanced
Detected in many
brain:
65.4
pineal gland:
35.4
retina:
35.6
FAM131B
ENSSSCG00000028274
ENSG00000159784
Family with sequence similarity 131 member B
Tissue enriched
Detected in some
brain:
28.3
FAM133A
ENSSSCG00000031033
ENSG00000179083
Family with sequence similarity 133 member A
Tissue enhanced
Detected in many
brain:
14.6
pituitary gland:
13.3
FAM135B
ENSSSCG00000005939
ENSG00000147724
Family with sequence similarity 135 member B
Group enriched
Detected in some
brain:
21.0
pineal gland:
14.7
retina:
7.1
FAM168A
ENSSSCG00000039996
ENSG00000054965
Family with sequence similarity 168 member A
Tissue enhanced
Detected in all
brain:
41.2
FAM169A
ENSSSCG00000014076
ENSG00000198780
Family with sequence similarity 169 member A
Tissue enhanced
Detected in many
cornea:
32.5
lens:
32.1
pineal gland:
28.7
pituitary gland:
27.6
retina:
49.7
FAM171A2
ENSSSCG00000017356
ENSG00000161682
Family with sequence similarity 171 member A2
Tissue enhanced
Detected in many
kidney:
29.7
male glands:
22.8
FAM181B
ENSSSCG00000014897
ENSG00000182103
Family with sequence similarity 181 member B
Tissue enriched
Detected in many
brain:
31.5
FAM19A4
ENSSSCG00000033199
ENSG00000163377
Family with sequence similarity 19 member A4, C-C motif chemokine like
Tissue enhanced
Detected in some
brain:
18.7
retina:
7.4
FAM200A
ENSSSCG00000029175
ENSG00000221909
Family with sequence similarity 200 member A
Low tissue specificity
Detected in all
FAM20B
ENSSSCG00000015524
ENSG00000116199
FAM20B, glycosaminoglycan xylosylkinase
Low tissue specificity
Detected in all
FAM213B
ENSSSCG00000026554
ENSG00000157870
Prostamide/prostaglandin F synthase
Tissue enhanced
Detected in many
brain:
21.2
lens:
53.5
FAM216A
ENSSSCG00000009822
ENSG00000204856
Protein FAM216A
Low tissue specificity
Detected in all
FAM222A
ENSSSCG00000009927
ENSG00000139438
Family with sequence similarity 222 member A
Tissue enhanced
Detected in many
adrenal gland:
39.2
lens:
42.6
retina:
24.7
FAM69A
ENSSSCG00000006900
ENSG00000154511
Family with sequence similarity 69 member A
Tissue enhanced
Detected in many
brain:
31.6
smooth muscle:
24.2
FAR1
ENSSSCG00000021170
ENSG00000197601
Fatty acyl-CoA reductase 1
Tissue enhanced
Detected in all
male glands:
76.8
FBXO21
ENSSSCG00000009858
ENSG00000135108
F-box only protein 21
Low tissue specificity
Detected in all
FBXO44
ENSSSCG00000003421
ENSG00000132879
F-box protein 44
Tissue enhanced
Detected in all
brain:
35.9
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