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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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826 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CCDC106
ENSSSCG00000035081
ENSG00000173581
Coiled-coil domain containing 106
Tissue enhanced
Detected in all
brain:
33.9
CCDC88A
ENSSSCG00000008406
ENSG00000115355
Coiled-coil domain containing 88A
Tissue enhanced
Detected in many
brain:
42.8
testis:
42.0
CCDC92
ENSSSCG00000009764
ENSG00000119242
Coiled-coil domain containing 92
Tissue enhanced
Detected in all
brain:
28.6
testis:
50.6
CCP110
ENSSSCG00000023829
ENSG00000103540
Centriolar coiled-coil protein 110
Tissue enhanced
Detected in all
brain:
59.4
CDH2
ENSSSCG00000003722
ENSG00000170558
Cadherin 2
Tissue enhanced
Detected in many
heart:
61.5
lens:
70.7
pituitary gland:
36.5
CDH20
ENSSSCG00000004903
ENSG00000101542
Cadherin 20
Tissue enriched
Detected in some
brain:
22.9
CDK15
ENSSSCG00000022296
ENSG00000138395
Cyclin dependent kinase 15
Tissue enhanced
Detected in many
lens:
15.2
CDKN2D
ENSSSCG00000013643
ENSG00000129355
Cyclin dependent kinase inhibitor 2D
Tissue enhanced
Detected in many
testis:
48.1
CEP97
ENSSSCG00000011949
ENSG00000182504
Centrosomal protein 97
Low tissue specificity
Detected in all
CFAP20
ENSSSCG00000002805
ENSG00000070761
Cilia- and flagella-associated protein 20
Tissue enriched
Detected in all
lens:
56.2
CFAP36
ENSSSCG00000008400
ENSG00000163001
Cilia- and flagella-associated protein 36
Low tissue specificity
Detected in all
CHIC1
ENSSSCG00000012416
ENSG00000204116
Cysteine rich hydrophobic domain 1
Low tissue specificity
Detected in many
CHST10
ENSSSCG00000008175
ENSG00000115526
Carbohydrate sulfotransferase 10
Tissue enhanced
Detected in many
brain:
51.7
CLASP2
ENSSSCG00000011236
ENSG00000163539
Cytoplasmic linker associated protein 2
Tissue enhanced
Detected in all
brain:
52.7
CLCN4
ENSSSCG00000024809
ENSG00000073464
Chloride voltage-gated channel 4
Tissue enhanced
Detected in many
brain:
26.5
lens:
27.1
pineal gland:
12.6
retina:
12.6
CLCN6
ENSSSCG00000003429
ENSG00000011021
Chloride voltage-gated channel 6
Tissue enriched
Detected in all
epididymis:
70.2
CLDN11
ENSSSCG00000011747
ENSG00000013297,ENSG00000285218
Claudin-11
Tissue enriched
Detected in some
brain:
149.9
CLDN6
ENSSSCG00000023743
ENSG00000184697
Claudin-6
Tissue enhanced
Detected in many
lens:
19.5
ovary:
8.7
CLIP4
ENSSSCG00000008535
ENSG00000115295
CAP-Gly domain containing linker protein family member 4
Tissue enhanced
Detected in many
testis:
43.0
vagus nerve:
34.0
CLSTN1
ENSSSCG00000003396
ENSG00000171603
Calsyntenin 1
Tissue enhanced
Detected in all
brain:
86.7
CLU
ENSSSCG00000009668
ENSG00000120885
Clusterin Clusterin beta chain Clusterin alpha chain
Tissue enhanced
Detected in all
cartilage:
638.2
CNNM2
ENSSSCG00000010593
ENSG00000148842
Cyclin and CBS domain divalent metal cation transport mediator 2
Tissue enhanced
Detected in all
choroid plexus:
62.9
CNTN1
ENSSSCG00000000789
ENSG00000018236
Contactin 1
Group enriched
Detected in many
brain:
71.1
pineal gland:
28.9
pituitary gland:
25.1
CNTN2
ENSSSCG00000040824
ENSG00000184144
Contactin 2
Tissue enriched
Detected in some
brain:
54.9
COPG2
ENSSSCG00000016553
ENSG00000158623
Coatomer subunit gamma-2
Tissue enhanced
Detected in all
pituitary gland:
74.7
CORO2B
ENSSSCG00000004962
ENSG00000103647
Coronin 2B
Tissue enhanced
Detected in many
brain:
52.5
CPE
ENSSSCG00000008854
ENSG00000109472
Carboxypeptidase E precursor
Tissue enhanced
Detected in many
brain:
78.2
pineal gland:
88.9
pituitary gland:
38.4
CPEB1
ENSSSCG00000001808
Cytoplasmic polyadenylation element-binding protein 1
Tissue enriched
Detected in many
lens:
70.9
CPVL
ENSSSCG00000016688
ENSG00000106066
Carboxypeptidase, vitellogenic like
Tissue enhanced
Detected in many
male glands:
19.8
thyroid gland:
64.3
CRELD1
ENSSSCG00000011560
ENSG00000163703
Cysteine rich with EGF like domains 1
Low tissue specificity
Detected in all
CRTAC1
ENSSSCG00000010530
ENSG00000095713
Cartilage acidic protein 1
Tissue enriched
Detected in some
cornea:
236.9
CSDC2
ENSSSCG00000000062
ENSG00000172346
Cold shock domain-containing protein C2
Tissue enhanced
Detected in many
adrenal gland:
67.1
brain:
58.4
ovary:
44.5
CTTNBP2
ENSSSCG00000016625
ENSG00000077063
Cortactin binding protein 2
Tissue enhanced
Detected in all
kidney:
75.6
CX3CR1
ENSSSCG00000024024
ENSG00000168329
C-X3-C motif chemokine receptor 1
Group enriched
Detected in many
brain:
43.4
pineal gland:
12.1
CXXC4
ENSSSCG00000025621
ENSG00000168772
CXXC finger protein 4
Tissue enhanced
Detected in many
pineal gland:
32.0
pituitary gland:
26.9
CXXC5
ENSSSCG00000037898
ENSG00000171604
CXXC finger protein 5
Low tissue specificity
Detected in all
DBX2
ENSSSCG00000035938
ENSG00000185610
Developing brain homeobox 2
Group enriched
Detected in many
brain:
22.8
cornea:
6.6
pineal gland:
5.7
DCAF16
ENSSSCG00000040393
ENSG00000163257
DDB1 and CUL4 associated factor 16
Low tissue specificity
Detected in all
DCHS2
ENSSSCG00000026886
ENSG00000197410
Dachsous cadherin-related 2
Group enriched
Detected in some
male glands:
9.9
pineal gland:
27.1
DCLK1
ENSSSCG00000033919
ENSG00000133083
Doublecortin like kinase 1
Tissue enhanced
Detected in many
brain:
69.5
pineal gland:
24.5
DCLK2
ENSSSCG00000009023
ENSG00000170390
Doublecortin like kinase 2
Tissue enhanced
Detected in all
brain:
39.9
lens:
55.9
DDAH1
ENSSSCG00000040735
ENSG00000153904
Dimethylarginine dimethylaminohydrolase 1
Tissue enhanced
Detected in many
brain:
48.9
kidney:
54.5
DDHD1
ENSSSCG00000005043
ENSG00000100523
DDHD domain containing 1
Tissue enhanced
Detected in all
male glands:
62.1
DDX24
ENSSSCG00000002470
ENSG00000089737
DEAD-box helicase 24
Tissue enhanced
Detected in all
testis:
57.2
DDX25
ENSSSCG00000015223
ENSG00000109832
DEAD-box helicase 25
Tissue enriched
Detected in some
testis:
49.3
DHX30
ENSSSCG00000011342
ENSG00000132153
DExH-box helicase 30
Low tissue specificity
Detected in all
DKK3
ENSSSCG00000013401
ENSG00000050165
Dickkopf-related protein 3 precursor
Tissue enhanced
Detected in many
heart:
96.2
ovary:
101.1
DMTN
ENSSSCG00000009613
ENSG00000158856
Dematin actin binding protein
Tissue enhanced
Detected in many
brain:
43.9
lens:
117.6
DNAJA4
ENSSSCG00000037646
ENSG00000140403
DnaJ homolog subfamily A member 4
Low tissue specificity
Detected in all
DNAJB2
ENSSSCG00000016217
ENSG00000135924
DnaJ heat shock protein family (Hsp40) member B2
Tissue enhanced
Detected in all
brain:
63.7
lens:
55.2
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