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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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826 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ATP6AP1
ENSSSCG00000037310
ENSG00000071553
ATPase H+ transporting accessory protein 1
Low tissue specificity
Detected in all
ATP6V0A1
ENSSSCG00000017401
ENSG00000033627
ATPase H+ transporting V0 subunit a1
Tissue enhanced
Detected in all
male glands:
58.2
ATP6V1H
ENSSSCG00000006263
ENSG00000047249
V-type proton ATPase subunit H
Tissue enhanced
Detected in all
pineal gland:
39.7
ATP8A1
ENSSSCG00000008803
ENSG00000124406
ATPase phospholipid transporting 8A1
Tissue enhanced
Detected in many
brain:
57.6
retina:
35.6
vagus nerve:
42.2
ATP9A
ENSSSCG00000007478
ENSG00000054793
Probable phospholipid-transporting ATPase IIA
Low tissue specificity
Detected in all
ATXN10
ENSSSCG00000024864
ENSG00000130638
Ataxin 10
Tissue enhanced
Detected in all
lens:
59.5
B3GAT1
ENSSSCG00000015259
ENSG00000109956
Beta-1,3-glucuronyltransferase 1
Tissue enhanced
Detected in some
brain:
50.2
vagus nerve:
28.5
B4GAT1
ENSSSCG00000012940
ENSG00000174684
Beta-1,4-glucuronyltransferase 1
Tissue enhanced
Detected in many
brain:
41.1
BAALC
ENSSSCG00000006053
ENSG00000164929
Brain and acute leukemia cytoplasmic protein
Tissue enhanced
Detected in all
brain:
31.2
BACE1
ENSSSCG00000015079
ENSG00000186318
Beta-secretase 1 precursor
Low tissue specificity
Detected in all
BBS7
ENSSSCG00000009093
ENSG00000138686
Bardet-Biedl syndrome 7
Low tissue specificity
Detected in all
BCAN
ENSSSCG00000006477
ENSG00000132692
Brevican
Tissue enriched
Detected in some
brain:
38.1
BCAS4
ENSSSCG00000007472
ENSG00000124243
Breast carcinoma-amplified sequence 4
Tissue enhanced
Detected in many
lens:
38.4
pineal gland:
27.0
BEST1
ENSSSCG00000023090
ENSG00000167995
Bestrophin 1
Tissue enhanced
Detected in many
pineal gland:
23.3
retina:
30.1
testis:
29.2
vagus nerve:
23.4
BEX1
ENSSSCG00000012525
Brain expressed, X-linked 1
Group enriched
Detected in many
brain:
54.7
pineal gland:
101.4
pituitary gland:
65.2
BEX3
ENSSSCG00000012528
ENSG00000166681
Protein BEX3 isoform a
Tissue enhanced
Detected in many
brain:
49.3
lens:
53.2
pineal gland:
49.5
pituitary gland:
57.4
BEX4
ENSSSCG00000022635
ENSG00000102409
Brain expressed X-linked 4
Tissue enhanced
Detected in all
ductus deferens:
44.6
pineal gland:
60.6
pituitary gland:
54.8
BEX5
ENSSSCG00000012514
ENSG00000184515
Brain expressed X-linked 5
Tissue enhanced
Detected in some
brain:
15.5
epididymis:
16.7
pineal gland:
13.7
pituitary gland:
42.9
BFSP2
ENSSSCG00000011636
ENSG00000170819
Beaded filament structural protein 2
Tissue enriched
Detected in single
lens:
638.0
BHLHB9
ENSSSCG00000012520
ENSG00000198908
Basic helix-loop-helix family member b9
Tissue enhanced
Detected in many
brain:
43.7
lens:
21.6
pituitary gland:
44.8
BICD1
ENSSSCG00000000531
ENSG00000151746
BICD cargo adaptor 1
Tissue enhanced
Detected in many
brain:
42.1
BLVRA
ENSSSCG00000016756
ENSG00000106605
Biliverdin reductase A
Low tissue specificity
Detected in all
BMP7
ENSSSCG00000007501
ENSG00000101144
Bone morphogenetic protein 7 precursor
Tissue enhanced
Detected in many
choroid plexus:
47.2
BMPR1B
ENSSSCG00000029621
ENSG00000138696
Bone morphogenetic protein receptor type-1B
Tissue enhanced
Detected in many
male glands:
30.2
ovary:
56.6
BTRC
ENSSSCG00000010563
ENSG00000166167
Beta-transducin repeat containing E3 ubiquitin protein ligase
Low tissue specificity
Detected in all
C10orf105
ENSSSCG00000038545
ENSG00000214688
Chromosome 10 open reading frame 105
Group enriched
Detected in some
brain:
17.0
cartilage:
9.4
synovial tissue:
16.6
C10orf90
ENSSSCG00000010747
ENSG00000154493
Chromosome 10 open reading frame 90
Tissue enhanced
Detected in some
brain:
39.2
skin:
14.2
testis:
35.6
C11orf49
ENSSSCG00000013246
ENSG00000149179
UPF0705 protein C11orf49 homolog
Tissue enhanced
Detected in many
brain:
19.7
pineal gland:
15.8
testis:
20.2
C14orf37
ENSSSCG00000005071
ENSG00000139971
Chromosome 14 open reading frame 37
Tissue enriched
Detected in many
pineal gland:
113.7
C16orf45
ENSSSCG00000032956
ENSG00000166780
Chromosome 16 open reading frame 45
Group enriched
Detected in many
brain:
44.4
pineal gland:
43.2
C1orf216
ENSSSCG00000037600
ENSG00000142686
Chromosome 1 open reading frame 216
Tissue enhanced
Detected in many
brain:
15.0
C1QL1
ENSSSCG00000039101
ENSG00000131094
C1q-related factor precursor
Group enriched
Detected in some
brain:
32.7
pineal gland:
19.1
retina:
13.8
C20orf194
ENSSSCG00000007155
ENSG00000088854
Chromosome 20 open reading frame 194
Low tissue specificity
Detected in all
C20orf202
ENSSSCG00000007192
ENSG00000215595
Chromosome 20 open reading frame 202
Tissue enhanced
Detected in some
brain:
17.9
lens:
6.0
C3orf18
ENSSSCG00000037433
ENSG00000088543
Chromosome 3 open reading frame 18
Tissue enhanced
Detected in many
retina:
14.2
C4orf48
ENSSSCG00000008686
ENSG00000243449
Chromosome 4 open reading frame 48
Tissue enhanced
Detected in many
brain:
41.5
lens:
37.4
testis:
57.6
C6orf136
ENSSSCG00000025943
ENSG00000204564
Uncharacterized protein C6orf136 homolog
Low tissue specificity
Detected in all
C8orf46
ENSSSCG00000023848
ENSG00000169085
Chromosome 8 open reading frame 46
Group enriched
Detected in some
brain:
59.3
lens:
47.6
C8orf89
ENSSSCG00000032228
ENSG00000274443
Chromosome 8 open reading frame 89
Tissue enhanced
Detected in many
brain:
25.8
testis:
28.1
CABP7
ENSSSCG00000025869
ENSG00000100314
Calcium binding protein 7
Tissue enriched
Detected in some
brain:
38.9
CACHD1
ENSSSCG00000004829
ENSG00000158966
Cache domain containing 1
Low tissue specificity
Detected in many
CADM1
ENSSSCG00000031831
ENSG00000182985
Cell adhesion molecule 1
Tissue enhanced
Detected in all
lens:
122.4
CADM2
ENSSSCG00000011999
ENSG00000175161
Cell adhesion molecule 2
Tissue enhanced
Detected in some
brain:
51.0
pineal gland:
22.4
retina:
25.0
CADM3
ENSSSCG00000006415
ENSG00000162706
Cell adhesion molecule 3
Tissue enhanced
Detected in many
brain:
64.4
lens:
28.0
pineal gland:
26.0
vagus nerve:
41.2
CALCR
ENSSSCG00000015320
ENSG00000004948
Calcitonin receptor
Tissue enriched
Detected in some
brain:
81.1
CALM3
ENSSSCG00000022545
Calmodulin
Tissue enhanced
Detected in all
brain:
130.0
CAMK1G
ENSSSCG00000015619
ENSG00000008118
Calcium/calmodulin-dependent protein kinase type 1G
Tissue enhanced
Detected in many
brain:
22.6
cervix:
37.6
endometrium:
22.5
CAPRIN2
ENSSSCG00000022611
ENSG00000110888
Caprin family member 2
Tissue enriched
Detected in many
lens:
196.8
CASKIN1
ENSSSCG00000033059
ENSG00000167971
CASK interacting protein 1
Tissue enhanced
Detected in many
brain:
21.1
cartilage:
28.5
CBFA2T2
ENSSSCG00000027410
ENSG00000078699
CBFA2/RUNX1 translocation partner 2
Low tissue specificity
Detected in all
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