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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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826 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABHD12
ENSSSCG00000040449
ENSG00000100997
Abhydrolase domain containing 12
Tissue enhanced
Detected in all
epididymis:
34.9
lens:
116.2
ABHD8
ENSSSCG00000031877
ENSG00000127220
Abhydrolase domain containing 8
Tissue enhanced
Detected in all
brain:
25.1
ABI2
ENSSSCG00000034630
ENSG00000138443
Abl interactor 2
Tissue enhanced
Detected in many
brain:
29.8
lens:
41.1
ACSBG1
ENSSSCG00000001760
ENSG00000103740
Acyl-CoA synthetase bubblegum family member 1
Tissue enhanced
Detected in many
brain:
37.3
vagus nerve:
16.3
ACTR1A
ENSSSCG00000010585
ENSG00000138107
ARP1 actin related protein 1 homolog A
Low tissue specificity
Detected in all
ADD3
ENSSSCG00000010621
ENSG00000148700
Adducin 3
Low tissue specificity
Detected in all
ADGRL3
ENSSSCG00000026129
ENSG00000150471
Adhesion G protein-coupled receptor L3
Tissue enhanced
Detected in many
brain:
28.5
pineal gland:
20.4
ADORA1
ENSSSCG00000021059
ENSG00000163485
Adenosine receptor A1
Tissue enhanced
Detected in many
adipose tissue:
21.7
brain:
24.7
male glands:
44.1
AGPAT3
ENSSSCG00000038081
ENSG00000160216
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma
Tissue enhanced
Detected in all
retina:
64.7
AIRE
ENSSSCG00000025294
ENSG00000160224
Autoimmune regulator
Tissue enhanced
Detected in some
brain:
8.2
kidney:
7.0
lymphoid tissue:
7.3
pituitary gland:
6.2
AKAIN1
ENSSSCG00000038232
ENSG00000231824
A-kinase anchor inhibitor 1
Tissue enhanced
Detected in all
adrenal gland:
38.5
pituitary gland:
39.9
AKT3
ENSSSCG00000010872
ENSG00000117020
RAC-gamma serine/threonine-protein kinase
Low tissue specificity
Detected in all
ALDOC
ENSSSCG00000017759
ENSG00000109107
Fructose-bisphosphate aldolase C
Tissue enhanced
Detected in many
adipose tissue:
85.9
brain:
145.7
pineal gland:
49.1
retina:
64.5
ALK
ENSSSCG00000008533
ENSG00000171094
ALK receptor tyrosine kinase
Tissue enhanced
Detected in some
brain:
5.5
choroid plexus:
7.7
pituitary gland:
8.0
testis:
13.0
ALKBH6
ENSSSCG00000002910
ENSG00000239382
AlkB homolog 6
Tissue enriched
Detected in all
choroid plexus:
92.0
ALS2
ENSSSCG00000016109
ENSG00000003393
ALS2, alsin Rho guanine nucleotide exchange factor
Tissue enhanced
Detected in all
brain:
52.3
lens:
46.4
AMER2
ENSSSCG00000022678
ENSG00000165566
APC membrane recruitment protein 2
Tissue enhanced
Detected in many
brain:
45.6
male glands:
11.6
pineal gland:
10.3
AMPH
ENSSSCG00000024136
ENSG00000078053
Amphiphysin
Group enriched
Detected in many
brain:
39.6
lens:
56.5
pineal gland:
19.6
pituitary gland:
21.3
retina:
32.4
ANGPT1
ENSSSCG00000006035
ENSG00000154188
Angiopoietin-1 precursor
Tissue enhanced
Detected in many
brain:
18.9
pituitary gland:
19.1
ANK2
ENSSSCG00000009125
ENSG00000145362
Ankyrin 2
Tissue enhanced
Detected in many
brain:
39.6
lens:
88.5
ANKH
ENSSSCG00000016784
ENSG00000154122
ANKH inorganic pyrophosphate transport regulator
Tissue enriched
Detected in many
cartilage:
124.6
ANO4
ENSSSCG00000000873
ENSG00000151572
Anoctamin 4
Tissue enhanced
Detected in many
brain:
16.9
cervix:
58.9
ANO5
ENSSSCG00000013344
ENSG00000171714
Anoctamin 5
Group enriched
Detected in many
brain:
22.4
skeletal muscle:
35.7
AP2B1
ENSSSCG00000017712
ENSG00000006125
AP-2 complex subunit beta
Tissue enhanced
Detected in all
testis:
64.4
APBA1
ENSSSCG00000005250
ENSG00000107282
Amyloid beta precursor protein binding family A member 1
Tissue enhanced
Detected in many
brain:
24.6
lens:
25.4
APBA2
ENSSSCG00000004849
ENSG00000034053
Amyloid beta precursor protein binding family A member 2
Group enriched
Detected in some
brain:
28.0
epididymis:
34.3
lens:
39.2
pineal gland:
13.5
APBB1
ENSSSCG00000014628
ENSG00000166313
Amyloid beta precursor protein binding family B member 1
Tissue enhanced
Detected in many
brain:
43.3
lens:
26.2
APC2
ENSSSCG00000023329
ENSG00000115266
Adenomatous polyposis coli protein 2
Tissue enhanced
Detected in many
brain:
23.0
APLP1
ENSSSCG00000002916
ENSG00000105290
Amyloid beta precursor like protein 1
Group enriched
Detected in many
brain:
164.7
pituitary gland:
53.6
AQP4
ENSSSCG00000035965
ENSG00000171885
Aquaporin-4
Group enriched
Detected in some
brain:
138.1
pineal gland:
88.9
ARHGAP35
ENSSSCG00000003107
ENSG00000160007
Rho GTPase activating protein 35
Low tissue specificity
Detected in all
ARHGAP36
ENSSSCG00000012669
ENSG00000147256
Rho GTPase activating protein 36
Group enriched
Detected in some
brain:
31.3
pituitary gland:
25.8
testis:
24.8
ARHGEF4
ENSSSCG00000035828
ENSG00000136002
Rho guanine nucleotide exchange factor 4
Tissue enhanced
Detected in many
brain:
29.4
lens:
18.4
ARHGEF9
ENSSSCG00000012362
ENSG00000131089
Cdc42 guanine nucleotide exchange factor 9
Tissue enhanced
Detected in many
brain:
38.2
pineal gland:
35.1
ARL10
ENSSSCG00000029985
ENSG00000175414
ADP ribosylation factor like GTPase 10
Low tissue specificity
Detected in all
ARL2-SNX15
ENSSSCG00000034387
ARL2-SNX15 readthrough (NMD candidate)
Low tissue specificity
Detected in all
ARL2BP
ENSSSCG00000002819
ENSG00000102931
ADP ribosylation factor like GTPase 2 binding protein
Low tissue specificity
Detected in all
ARL3
ENSSSCG00000031782
ENSG00000138175
ADP-ribosylation factor-like protein 3
Tissue enhanced
Detected in all
lens:
44.5
pineal gland:
36.6
ARL8A
ENSSSCG00000036967
ENSG00000143862
ADP ribosylation factor like GTPase 8A
Tissue enhanced
Detected in all
brain:
58.1
ARL9
ENSSSCG00000008899
ENSG00000196503
ADP ribosylation factor like GTPase 9
Tissue enhanced
Detected in all
testis:
53.7
ARMCX1
ENSSSCG00000038569
ENSG00000126947
Armadillo repeat containing, X-linked 1
Tissue enhanced
Detected in many
kidney:
23.4
ARMCX2
ENSSSCG00000012510
ENSG00000184867
Armadillo repeat containing, X-linked 2
Tissue enhanced
Detected in many
brain:
18.4
pineal gland:
18.0
pituitary gland:
18.1
ARMCX4
ENSSSCG00000034821
ENSG00000196440
Armadillo repeat containing, X-linked 4
Tissue enhanced
Detected in many
choroid plexus:
20.9
ARMCX5
ENSSSCG00000012518
ENSG00000125962
Armadillo repeat containing, X-linked 5
Low tissue specificity
Detected in all
ARNT2
ENSSSCG00000040288
ENSG00000172379
Aryl hydrocarbon receptor nuclear translocator 2
Tissue enhanced
Detected in many
brain:
40.4
cornea:
43.5
epididymis:
27.7
ARSE
ENSSSCG00000022129
ENSG00000157399
Arylsulfatase E precursor
Tissue enhanced
Detected in many
cartilage:
24.1
ASRGL1
ENSSSCG00000013065
ENSG00000162174
Asparaginase like 1
Tissue enhanced
Detected in all
testis:
45.8
ASXL3
ENSSSCG00000003736
ENSG00000141431
Additional sex combs like 3, transcriptional regulator
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.4
testis:
16.1
ATP13A4
ENSSSCG00000011821
ENSG00000127249
ATPase 13A4
Group enriched
Detected in some
ductus deferens:
24.5
epididymis:
62.6
male glands:
70.4
ATP1A2
ENSSSCG00000006391
ENSG00000018625
Sodium/potassium-transporting ATPase subunit alpha-2
Tissue enhanced
Detected in all
brain:
103.3
choroid plexus:
63.2
skeletal muscle:
61.8
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