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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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826 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RNF182
ENSSSCG00000038290
ENSG00000180537
Ring finger protein 182
Tissue enriched
Detected in some
lens:
45.8
RNF34
ENSSSCG00000037811
ENSG00000170633
Ring finger protein 34
Low tissue specificity
Detected in all
RNFT2
ENSSSCG00000009862
ENSG00000135119
Ring finger protein, transmembrane 2
Tissue enhanced
Detected in many
brain:
16.5
RPP25
ENSSSCG00000001888
ENSG00000178718
Ribonuclease P and MRP subunit p25
Group enriched
Detected in many
brain:
29.7
lens:
15.9
RPRD1A
ENSSSCG00000027700
ENSG00000141425
Regulation of nuclear pre-mRNA domain containing 1A
Low tissue specificity
Detected in all
RPS6KA6
ENSSSCG00000012456
ENSG00000072133
Ribosomal protein S6 kinase A6
Tissue enhanced
Detected in many
brain:
9.1
fallopian tube:
7.9
pituitary gland:
9.1
RRAGB
ENSSSCG00000037228
ENSG00000083750
Ras related GTP binding B
Low tissue specificity
Detected in all
RTL6
ENSSSCG00000000022
ENSG00000188636
Retrotransposon Gag like 6
Low tissue specificity
Detected in all
RUFY2
ENSSSCG00000010239
ENSG00000204130
RUN and FYVE domain containing 2
Low tissue specificity
Detected in all
RUFY3
ENSSSCG00000025514
ENSG00000018189
RUN and FYVE domain containing 3
Low tissue specificity
Detected in all
RUNDC3B
ENSSSCG00000024485
ENSG00000105784
RUN domain containing 3B
Tissue enhanced
Detected in many
brain:
43.9
lens:
18.3
RWDD2A
ENSSSCG00000029129
ENSG00000013392
RWD domain containing 2A
Tissue enhanced
Detected in all
testis:
25.4
S100A1
ENSSSCG00000031053
ENSG00000160678
S100 calcium binding protein A1
Tissue enhanced
Detected in many
brain:
250.1
cartilage:
96.8
pineal gland:
70.9
SALL1
ENSSSCG00000002836
ENSG00000103449
Spalt like transcription factor 1
Tissue enhanced
Detected in many
kidney:
21.5
lens:
43.4
liver:
21.1
pineal gland:
26.1
thyroid gland:
31.4
SALL2
ENSSSCG00000022705
ENSG00000165821
Spalt like transcription factor 2
Tissue enhanced
Detected in many
brain:
41.7
pituitary gland:
29.5
SALL3
ENSSSCG00000004858
ENSG00000256463
Spalt like transcription factor 3
Tissue enhanced
Detected in some
brain:
14.0
heart:
12.0
male glands:
55.2
SCAMP5
ENSSSCG00000001887
ENSG00000198794
Secretory carrier membrane protein 5
Tissue enhanced
Detected in many
brain:
40.0
retina:
30.2
SCD5
ENSSSCG00000009245
ENSG00000145284
Stearoyl-CoA desaturase 5
Tissue enhanced
Detected in many
brain:
40.2
SCN9A
ENSSSCG00000015913
ENSG00000169432
Sodium voltage-gated channel alpha subunit 9
Tissue enhanced
Detected in many
brain:
19.2
pituitary gland:
17.5
SCRG1
ENSSSCG00000032048
ENSG00000164106
Stimulator of chondrogenesis 1
Tissue enhanced
Detected in all
brain:
26.9
cartilage:
29.5
SCRN1
ENSSSCG00000016684
ENSG00000136193
Secernin 1
Tissue enhanced
Detected in many
brain:
44.6
epididymis:
22.9
lens:
29.3
pineal gland:
20.8
retina:
22.6
SDR39U1
ENSSSCG00000001983
ENSG00000100445
Short chain dehydrogenase/reductase family 39U member 1
Low tissue specificity
Detected in all
SEC61A2
ENSSSCG00000011114
ENSG00000065665
Sec61 translocon alpha 2 subunit
Tissue enhanced
Detected in all
brain:
41.9
testis:
54.9
SEMA5B
ENSSSCG00000011872
ENSG00000082684
Semaphorin 5B
Group enriched
Detected in many
lens:
33.7
thyroid gland:
31.1
SEPT4
ENSSSCG00000017643
ENSG00000108387
Septin 4
Tissue enriched
Detected in many
brain:
117.5
SERP2
ENSSSCG00000040405
ENSG00000151778
Stress associated endoplasmic reticulum protein family member 2
Tissue enhanced
Detected in many
brain:
26.5
pineal gland:
11.2
SH2D7
ENSSSCG00000001764
ENSG00000183476
SH2 domain containing 7
Tissue enhanced
Detected in many
brain:
27.7
SH3GL3
ENSSSCG00000001795
ENSG00000140600
SH3 domain containing GRB2 like 3, endophilin A3
Group enriched
Detected in many
brain:
43.5
testis:
22.4
SLAIN1
ENSSSCG00000009475
ENSG00000139737
SLAIN motif family member 1
Tissue enriched
Detected in many
brain:
95.7
SLC14A1
ENSSSCG00000004492
ENSG00000141469
Solute carrier family 14 member 1 (Kidd blood group)
Tissue enhanced
Detected in all
brain:
34.6
kidney:
39.0
SLC16A2
ENSSSCG00000029458
ENSG00000147100
Solute carrier family 16 member 2
Tissue enhanced
Detected in all
adrenal gland:
42.6
choroid plexus:
40.3
SLC1A4
ENSSSCG00000028282
ENSG00000115902
Solute carrier family 1 member 4
Tissue enhanced
Detected in many
lens:
49.8
skin:
26.5
SLC22A15
ENSSSCG00000006743
ENSG00000163393
Solute carrier family 22 member 15
Low tissue specificity
Detected in many
SLC22A17
ENSSSCG00000002025
ENSG00000092096
Solute carrier family 22 member 17
Group enriched
Detected in many
brain:
76.7
choroid plexus:
131.9
SLC22A6
ENSSSCG00000023571
ENSG00000197901
Solute carrier family 22 member 6
Tissue enhanced
Detected in some
brain:
38.9
kidney:
38.9
vagus nerve:
20.4
SLC23A2
ENSSSCG00000026466
ENSG00000089057
Solute carrier family 23 member 2
Group enriched
Detected in all
adrenal gland:
45.6
choroid plexus:
85.9
SLC24A2
ENSSSCG00000005167
ENSG00000155886
Sodium/potassium/calcium exchanger 2
Group enriched
Detected in some
brain:
49.8
epididymis:
19.6
lens:
12.6
pineal gland:
19.5
retina:
20.6
SLC24A4
ENSSSCG00000002450
ENSG00000140090
Solute carrier family 24 member 4
Tissue enriched
Detected in some
choroid plexus:
71.8
SLC24A5
ENSSSCG00000004662
ENSG00000188467
Solute carrier family 24 member 5
Tissue enhanced
Detected in many
choroid plexus:
18.2
SLC25A14
ENSSSCG00000012660
ENSG00000102078
Solute carrier family 25 member 14
Tissue enhanced
Detected in all
brain:
17.8
SLC26A11
ENSSSCG00000021040
ENSG00000181045
Sodium-independent sulfate anion transporter
Tissue enriched
Detected in many
brain:
64.5
SLC35F1
ENSSSCG00000004250
ENSG00000196376
Solute carrier family 35 member F1
Tissue enhanced
Detected in many
brain:
21.6
choroid plexus:
11.6
pineal gland:
17.5
vagus nerve:
17.1
SLC6A13
ENSSSCG00000030076
ENSG00000010379
Solute carrier family 6 member 13
Tissue enhanced
Detected in some
adipose tissue:
8.2
brain:
33.4
pineal gland:
10.8
SLC7A10
ENSSSCG00000002864
ENSG00000130876
Solute carrier family 7 member 10
Tissue enhanced
Detected in many
brain:
15.2
mesothelial tissue:
9.5
synovial tissue:
8.0
vagus nerve:
12.3
SLC7A11
ENSSSCG00000022649
ENSG00000151012
Solute carrier family 7 member 11
Tissue enhanced
Detected in many
brain:
41.4
epididymis:
23.8
skin:
23.3
SLC8A3
ENSSSCG00000002315
ENSG00000100678
Solute carrier family 8 member A3
Tissue enhanced
Detected in many
brain:
19.5
cartilage:
43.4
skeletal muscle:
17.7
SLC9A6
ENSSSCG00000012698
ENSG00000198689
Solute carrier family 9 member A6
Tissue enhanced
Detected in all
brain:
28.0
SMARCA1
ENSSSCG00000012649
ENSG00000102038
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Tissue enhanced
Detected in all
ovary:
104.0
SMYD3
ENSSSCG00000022034
ENSG00000185420
Histone-lysine N-methyltransferase SMYD3
Low tissue specificity
Detected in all
SNRPN
ENSSSCG00000028124
ENSG00000128739
Small nuclear ribonucleoprotein-associated protein N
Tissue enhanced
Detected in many
brain:
75.1
lens:
52.1
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