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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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RELEASE HISTORY
826 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NUDT6
ENSSSCG00000009085
ENSG00000170917
Nudix hydrolase 6
Tissue enhanced
Detected in all
choroid plexus:
35.3
NWD1
ENSSSCG00000013865
ENSG00000188039
NACHT and WD repeat domain containing 1
Tissue enhanced
Detected in some
brain:
16.4
pineal gland:
6.6
NXPE3
ENSSSCG00000011950
ENSG00000144815
Neurexophilin and PC-esterase domain family member 3
Low tissue specificity
Detected in all
NYAP1
ENSSSCG00000030337
ENSG00000166924
Neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1
Low tissue specificity
Detected in many
OLIG1
ENSSSCG00000012040
ENSG00000184221
Oligodendrocyte transcription factor 1
Tissue enriched
Detected in some
brain:
71.2
OLIG2
ENSSSCG00000012039
ENSG00000205927
Oligodendrocyte transcription factor 2
Tissue enriched
Detected in single
brain:
35.4
OMG
ENSSSCG00000017751
ENSG00000126861
Oligodendrocyte myelin glycoprotein
Tissue enriched
Detected in some
brain:
76.0
OPALIN
ENSSSCG00000010506
ENSG00000197430
Opalin
Tissue enriched
Detected in single
brain:
154.8
ORAI2
ENSSSCG00000023912
ENSG00000160991
ORAI calcium release-activated calcium modulator 2
Low tissue specificity
Detected in all
OSBPL1A
ENSSSCG00000003712
ENSG00000141447
Oxysterol binding protein like 1A
Tissue enhanced
Detected in all
brain:
50.2
lens:
90.9
OSBPL6
ENSSSCG00000023133
ENSG00000079156
Oxysterol binding protein like 6
Low tissue specificity
Detected in all
OTOS
ENSSSCG00000039496
ENSG00000178602
Otospiralin
Group enriched
Detected in many
brain:
26.2
epididymis:
7.8
male glands:
14.0
P2RY12
ENSSSCG00000011713
ENSG00000169313
P2Y purinoceptor 12
Tissue enhanced
Detected in many
brain:
35.2
pineal gland:
16.4
P4HTM
ENSSSCG00000011368
ENSG00000178467
Prolyl 4-hydroxylase, transmembrane
Tissue enhanced
Detected in many
brain:
19.7
kidney:
17.3
PABPC5
ENSSSCG00000040194
ENSG00000174740
Poly(A) binding protein cytoplasmic 5
Tissue enhanced
Detected in some
brain:
6.8
pineal gland:
10.4
pituitary gland:
7.2
PAFAH1B1
ENSSSCG00000017836
ENSG00000007168
Platelet-activating factor acetylhydrolase IB subunit alpha
Low tissue specificity
Detected in all
PAK3
ENSSSCG00000025306
ENSG00000077264
P21 (RAC1) activated kinase 3
Tissue enhanced
Detected in many
brain:
35.9
ductus deferens:
43.4
male glands:
39.4
PAPSS1
ENSSSCG00000031901
ENSG00000138801
3'-phosphoadenosine 5'-phosphosulfate synthase 1
Tissue enhanced
Detected in all
cartilage:
53.4
PAQR4
ENSSSCG00000026248
ENSG00000162073
Progestin and adipoQ receptor family member 4
Tissue enhanced
Detected in many
brain:
14.9
retina:
19.5
PAQR7
ENSSSCG00000003551
ENSG00000182749
Membrane progestin receptor alpha
Tissue enhanced
Detected in many
brain:
15.8
testis:
21.3
PAQR8
ENSSSCG00000001750
ENSG00000170915
Membrane progestin receptor beta
Tissue enhanced
Detected in many
brain:
29.9
stomach:
17.2
vagus nerve:
18.6
PARD6A
ENSSSCG00000034863
ENSG00000102981
Par-6 family cell polarity regulator alpha
Tissue enhanced
Detected in many
brain:
11.1
PAX6
ENSSSCG00000013320
ENSG00000007372
Paired box protein Pax-6 isoform 1
Tissue enhanced
Detected in some
cornea:
121.0
lens:
48.8
retina:
31.4
PCBP4
ENSSSCG00000028446
ENSG00000090097
Poly(rC) binding protein 4
Tissue enhanced
Detected in many
brain:
47.4
pineal gland:
60.2
retina:
87.1
vagus nerve:
53.4
PCDH9
ENSSSCG00000038842
ENSG00000184226
Protocadherin 9
Group enriched
Detected in many
brain:
123.4
pineal gland:
30.8
PCDHGA2
ENSSSCG00000031384
ENSG00000081853
Protocadherin gamma subfamily A, 2
Tissue enhanced
Detected in many
pituitary gland:
15.5
PCDHGA3
ENSSSCG00000033765
ENSG00000254245
Protocadherin gamma subfamily A, 3
Low tissue specificity
Detected in all
PCDHGC4
ENSSSCG00000027371
ENSG00000242419
Protocadherin gamma subfamily C, 4
Low tissue specificity
Detected in all
PCP4
ENSSSCG00000037110
ENSG00000183036
Purkinje cell protein 4
Tissue enhanced
Detected in many
brain:
191.5
cervix:
123.3
choroid plexus:
146.3
pineal gland:
203.2
PCSK1N
ENSSSCG00000021328
ENSG00000102109
Proprotein convertase subtilisin/kexin type 1 inhibitor
Tissue enhanced
Detected in many
brain:
67.0
pituitary gland:
47.2
PCYT1B
ENSSSCG00000012182
ENSG00000102230
Phosphate cytidylyltransferase 1, choline, beta
Tissue enhanced
Detected in some
brain:
15.5
choroid plexus:
7.2
pituitary gland:
7.2
retina:
7.9
testis:
10.3
PEG10
ENSSSCG00000036049
ENSG00000242265
Sus scrofa paternally expressed 10 (PEG10), transcript variant 2, mRNA.
Group enriched
Detected in many
brain:
98.3
pituitary gland:
71.1
PEX5L
ENSSSCG00000011766
ENSG00000114757
Peroxisomal biogenesis factor 5 like
Tissue enhanced
Detected in many
brain:
43.0
retina:
16.2
vagus nerve:
21.3
PFN2
ENSSSCG00000030260
ENSG00000070087
Profilin 2
Tissue enhanced
Detected in all
brain:
94.9
lens:
57.1
PGBD1
ENSSSCG00000001207
ENSG00000137338
PiggyBac transposable element derived 1
Tissue enhanced
Detected in all
brain:
29.1
PHF21B
ENSSSCG00000000020
ENSG00000056487
PHD finger protein 21B
Low tissue specificity
Detected in many
PHGDH
ENSSSCG00000006717
ENSG00000092621
D-3-phosphoglycerate dehydrogenase
Tissue enhanced
Detected in many
brain:
44.1
endometrium:
80.4
PHLPP2
ENSSSCG00000002739
ENSG00000040199
PH domain and leucine rich repeat protein phosphatase 2
Low tissue specificity
Detected in all
PHYHIPL
ENSSSCG00000039215
ENSG00000165443
Phytanoyl-CoA hydroxylase-interacting protein-like
Group enriched
Detected in many
brain:
51.1
pineal gland:
23.5
PIK3R3
ENSSSCG00000003909
ENSG00000117461
Phosphoinositide-3-kinase regulatory subunit 3
Tissue enhanced
Detected in all
brain:
52.5
PIP4P2
ENSSSCG00000006121
ENSG00000155099
Phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
Tissue enhanced
Detected in many
brain:
16.8
PIP5KL1
ENSSSCG00000005629
ENSG00000167103
Phosphatidylinositol-4-phosphate 5-kinase like 1
Tissue enhanced
Detected in many
brain:
6.7
cartilage:
7.9
PITPNA
ENSSSCG00000025248
ENSG00000174238
Phosphatidylinositol transfer protein alpha
Low tissue specificity
Detected in all
PKP4
ENSSSCG00000015878
ENSG00000144283
Plakophilin 4
Tissue enhanced
Detected in all
brain:
97.4
PLD3
ENSSSCG00000025109
ENSG00000105223
Phospholipase D3
Tissue enhanced
Detected in all
brain:
83.4
pituitary gland:
95.2
PLD5
ENSSSCG00000021132
ENSG00000180287
Phospholipase D family member 5
Group enriched
Detected in many
brain:
21.5
choroid plexus:
31.4
male glands:
12.0
PLEKHB1
ENSSSCG00000014827
ENSG00000021300
Pleckstrin homology domain-containing family B member 1
Group enriched
Detected in many
brain:
163.6
pineal gland:
61.6
retina:
103.4
vagus nerve:
86.5
PLEKHM3
ENSSSCG00000016141
ENSG00000178385
Pleckstrin homology domain containing M3
Tissue enhanced
Detected in all
lens:
56.5
PLP1
ENSSSCG00000012536
ENSG00000123560
Myelin proteolipid protein
Tissue enriched
Detected in some
brain:
604.9
PLPP4
ENSSSCG00000010691
ENSG00000203805
Phospholipid phosphatase 4
Tissue enhanced
Detected in many
brain:
19.1
heart:
10.0
kidney:
26.1
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