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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LRTM1
ENSSSCG00000011461
ENSG00000144771
Leucine rich repeats and transmembrane domains 1
Tissue enriched
Detected in some
retina:
32.1
LYPD1
ENSSSCG00000035102
ENSG00000150551
Ly6/PLAUR domain-containing protein 1 precursor
Tissue enhanced
Detected in many
brain:
33.3
thyroid gland:
15.2
LZTS1
ENSSSCG00000028559
ENSG00000061337
Leucine zipper tumor suppressor 1
Group enriched
Detected in many
brain:
34.3
lymphoid tissue:
15.2
LZTS3
ENSSSCG00000007161
ENSG00000088899
Leucine zipper tumor suppressor family member 3
Tissue enhanced
Detected in all
brain:
44.5
MAP2K1
ENSSSCG00000004943
ENSG00000169032
Dual specificity mitogen-activated protein kinase kinase 1
Tissue enhanced
Detected in all
brain:
54.6
MAP3K12
ENSSSCG00000000275
ENSG00000139625
Mitogen-activated protein kinase kinase kinase 12
Low tissue specificity
Detected in all
MAP3K9
ENSSSCG00000002329
ENSG00000006432
Mitogen-activated protein kinase kinase kinase 9
Tissue enhanced
Detected in many
brain:
25.6
MAPK1
ENSSSCG00000010081
ENSG00000100030
Mitogen-activated protein kinase 1
Low tissue specificity
Detected in all
MAPK11
ENSSSCG00000033171
ENSG00000185386
Mitogen-activated protein kinase 11
Tissue enhanced
Detected in many
brain:
13.1
MARCH1
ENSSSCG00000039175
ENSG00000145416
Membrane associated ring-CH-type finger 1
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
retina:
20.3
MARCH4
ENSSSCG00000016176
ENSG00000144583
Membrane associated ring-CH-type finger 4
Tissue enhanced
Detected in all
pituitary gland:
16.1
MARF1
ENSSSCG00000029168
ENSG00000166783
Meiosis regulator and mRNA stability factor 1
Low tissue specificity
Detected in all
MAS1
ENSSSCG00000004045
ENSG00000130368
MAS1 proto-oncogene, G protein-coupled receptor
Tissue enriched
Detected in some
brain:
23.8
MCHR1
ENSSSCG00000000074
ENSG00000128285
Melanin-concentrating hormone receptor 1
Tissue enriched
Detected in some
brain:
21.6
MDGA1
ENSSSCG00000001582
ENSG00000112139
MAM domain containing glycosylphosphatidylinositol anchor 1
Group enriched
Detected in many
brain:
14.0
ovary:
22.6
pineal gland:
23.0
retina:
6.7
MEF2C
ENSSSCG00000014149
ENSG00000081189
Myocyte-specific enhancer factor 2C
Tissue enhanced
Detected in many
brain:
69.6
skeletal muscle:
36.0
MEIKIN
ENSSSCG00000014271
ENSG00000239642
Meiotic kinetochore factor
Tissue enhanced
Detected in some
adrenal gland:
32.5
epididymis:
18.0
retina:
19.7
testis:
15.9
MESP2
ENSSSCG00000001848
ENSG00000188095
Mesoderm posterior bHLH transcription factor 2
Low tissue specificity
Detected in all
METAP1D
ENSSSCG00000015951
ENSG00000172878
Methionyl aminopeptidase type 1D, mitochondrial
Low tissue specificity
Detected in all
MEX3B
ENSSSCG00000038491
ENSG00000183496
Mex-3 RNA binding family member B
Tissue enhanced
Detected in all
testis:
24.4
MFSD13A
ENSSSCG00000010584
ENSG00000138111
Major facilitator superfamily domain containing 13A
Low tissue specificity
Detected in all
MGAT5B
ENSSSCG00000017170
ENSG00000167889
Mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
Tissue enriched
Detected in some
brain:
29.0
MICAL2
ENSSSCG00000013400
ENSG00000133816
Microtubule associated monooxygenase, calponin and LIM domain containing 2
Tissue enhanced
Detected in all
heart:
56.7
MMD
ENSSSCG00000017605
ENSG00000108960
Monocyte to macrophage differentiation associated
Tissue enhanced
Detected in all
ovary:
43.0
MMP17
ENSSSCG00000024236
ENSG00000198598
Matrix metallopeptidase 17
Group enriched
Detected in some
brain:
18.9
cornea:
6.5
lymphoid tissue:
12.5
pineal gland:
6.2
MOXD1
ENSSSCG00000004191
ENSG00000079931
Monooxygenase DBH like 1
Tissue enhanced
Detected in many
cornea:
73.8
liver:
18.1
skin:
19.6
MPP3
ENSSSCG00000017372
ENSG00000161647
Membrane palmitoylated protein 3
Tissue enhanced
Detected in many
brain:
21.8
heart:
7.6
MPPE1
ENSSSCG00000028126
ENSG00000154889
Metallophosphoesterase 1
Tissue enriched
Detected in many
brain:
51.3
MPPED1
ENSSSCG00000038685
ENSG00000186732
Metallophosphoesterase domain containing 1
Tissue enhanced
Detected in some
brain:
41.2
male glands:
15.0
stomach:
10.4
MYCN
ENSSSCG00000008618
ENSG00000134323
MYCN proto-oncogene, bHLH transcription factor
Tissue enhanced
Detected in all
skin:
26.8
MYRIP
ENSSSCG00000011269
ENSG00000170011
Rab effector MyRIP
Tissue enhanced
Detected in many
male glands:
35.2
MYT1L
ENSSSCG00000029334
ENSG00000186487
Myelin transcription factor 1 like
Group enriched
Detected in some
brain:
17.3
retina:
4.5
na
ENSSSCG00000000883
Tissue enhanced
Detected in some
adrenal gland:
3.4
brain:
7.3
retina:
3.0
na
ENSSSCG00000001489
Tissue enhanced
Detected in many
adipose tissue:
5.0
brain:
5.1
skin:
4.9
na
ENSSSCG00000003230
ENSG00000160318
Tissue enhanced
Detected in many
heart:
26.0
testis:
60.7
na
ENSSSCG00000003453
Low tissue specificity
Detected in all
na
ENSSSCG00000003659
ENSG00000198754
Tissue enhanced
Detected in many
brain:
4.7
testis:
5.5
na
ENSSSCG00000003793
Group enriched
Detected in some
brain:
32.1
epididymis:
18.1
na
ENSSSCG00000004072
Group enriched
Detected in many
brain:
27.3
thyroid gland:
107.3
na
ENSSSCG00000004081
Tissue enhanced
Detected in many
brain:
60.3
na
ENSSSCG00000004284
ENSG00000203908
Tissue enhanced
Detected in some
brain:
3.7
cartilage:
3.9
ovary:
10.0
pituitary gland:
3.3
small intestine:
3.6
na
ENSSSCG00000004406
ENSG00000146360
G-protein coupled receptor 6
Group enriched
Detected in some
brain:
35.0
pituitary gland:
11.1
na
ENSSSCG00000004850
ENSG00000104059
Tissue enriched
Detected in some
brain:
26.0
na
ENSSSCG00000005473
Group enriched
Detected in some
brain:
8.8
epididymis:
24.1
salivary gland:
17.5
na
ENSSSCG00000005795
ENSG00000174970
Not detected
Not detected
na
ENSSSCG00000006254
Tissue enhanced
Detected in many
brain:
13.6
skin:
11.3
na
ENSSSCG00000006320
Tissue enriched
Detected in single
brain:
8.4
na
ENSSSCG00000006531
ENSG00000143590,ENSG00000251246
Tissue enhanced
Detected in many
brain:
30.4
skin:
39.7
na
ENSSSCG00000006558
Tissue enriched
Detected in some
testis:
154.9
na
ENSSSCG00000006770
Tissue enhanced
Detected in some
brain:
2.4
large intestine:
1.5
retina:
1.3
testis:
2.2
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