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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
INPP4A
ENSSSCG00000008190
ENSG00000040933
Type I inositol 3,4-bisphosphate 4-phosphatase
Tissue enhanced
Detected in all
lymphoid tissue:
51.4
ISLR2
ENSSSCG00000036011
ENSG00000167178
Immunoglobulin superfamily containing leucine rich repeat 2
Tissue enhanced
Detected in many
brain:
18.8
mesothelial tissue:
13.3
vagus nerve:
15.9
JAKMIP1
ENSSSCG00000008710
ENSG00000152969
Janus kinase and microtubule interacting protein 1
Tissue enhanced
Detected in many
brain:
21.1
stomach:
12.5
JPT1
ENSSSCG00000017213
ENSG00000189159
Hematological and neurological expressed 1 protein
Low tissue specificity
Detected in all
KCNA10
ENSSSCG00000006803
ENSG00000143105
Potassium voltage-gated channel subfamily A member 10
Tissue enhanced
Detected in single
brain:
2.1
KCNA4
ENSSSCG00000013330
ENSG00000182255
Potassium voltage-gated channel subfamily A member 4
Group enriched
Detected in some
adrenal gland:
13.7
brain:
30.8
KCNAB1
ENSSSCG00000025810
ENSG00000169282
Voltage-gated potassium channel subunit beta-1
Tissue enhanced
Detected in all
brain:
41.0
lens:
31.0
pineal gland:
32.8
KCNAB2
ENSSSCG00000020749
ENSG00000069424
Potassium voltage-gated channel subfamily A regulatory beta subunit 2
Group enriched
Detected in many
brain:
55.2
retina:
14.5
KCND3
ENSSSCG00000026680
ENSG00000171385
Potassium voltage-gated channel subfamily D member 3
Tissue enhanced
Detected in many
brain:
26.8
KCNF1
ENSSSCG00000033463
ENSG00000162975
Potassium voltage-gated channel modifier subfamily F member 1
Group enriched
Detected in some
adrenal gland:
31.6
brain:
39.0
KCNG1
ENSSSCG00000007476
ENSG00000026559
Potassium voltage-gated channel subfamily G member 1
Tissue enhanced
Detected in all
brain:
19.5
cervix:
16.8
endometrium:
20.6
KCNG2
ENSSSCG00000005780
ENSG00000178342
Potassium voltage-gated channel modifier subfamily G member 2
Tissue enriched
Detected in many
brain:
28.3
KCNH3
ENSSSCG00000000203
ENSG00000135519
Potassium voltage-gated channel subfamily H member 3
Tissue enriched
Detected in some
brain:
29.4
KCNH7
ENSSSCG00000015898
ENSG00000184611
Potassium voltage-gated channel subfamily H member 7
Tissue enriched
Detected in some
brain:
35.7
KCNIP2
ENSSSCG00000010570
ENSG00000120049
Potassium voltage-gated channel interacting protein 2
Group enriched
Detected in many
brain:
34.9
heart:
89.5
KCNIP3
ENSSSCG00000008119
ENSG00000115041
Potassium voltage-gated channel interacting protein 3
Tissue enhanced
Detected in all
brain:
31.1
KCNJ4
ENSSSCG00000000106
ENSG00000168135
Potassium voltage-gated channel subfamily J member 4
Group enriched
Detected in some
brain:
26.1
heart:
79.9
KCNK15
ENSSSCG00000007377
ENSG00000124249
Potassium two pore domain channel subfamily K member 15
Tissue enriched
Detected in some
brain:
14.4
KCNK3
ENSSSCG00000008563
ENSG00000171303
Potassium channel subfamily K member 3
Tissue enhanced
Detected in many
adrenal gland:
54.5
heart:
37.5
ovary:
19.6
KCNK4
ENSSSCG00000013031
ENSG00000182450
Potassium two pore domain channel subfamily K member 4
Tissue enriched
Detected in some
brain:
15.4
KCNK9
ENSSSCG00000033397
ENSG00000169427
Potassium two pore domain channel subfamily K member 9
Group enriched
Detected in some
adrenal gland:
6.8
brain:
18.3
male glands:
15.5
KCNMB4
ENSSSCG00000031173
ENSG00000135643
Potassium calcium-activated channel subfamily M regulatory beta subunit 4
Group enriched
Detected in many
brain:
18.8
choroid plexus:
30.4
vagus nerve:
32.4
KCNQ3
ENSSSCG00000005953
ENSG00000184156
Potassium voltage-gated channel subfamily Q member 3
Tissue enriched
Detected in some
brain:
36.7
KCNQ5
ENSSSCG00000004281
ENSG00000185760
Potassium voltage-gated channel subfamily Q member 5
Group enriched
Detected in many
brain:
24.8
cartilage:
65.1
KCNS2
ENSSSCG00000031917
ENSG00000156486
Potassium voltage-gated channel modifier subfamily S member 2
Tissue enhanced
Detected in many
brain:
16.5
testis:
7.6
KCNS3
ENSSSCG00000031905
ENSG00000170745
Potassium voltage-gated channel subfamily S member 3
Tissue enhanced
Detected in many
brain:
15.7
gallbladder:
17.2
urinary bladder:
14.7
KCNV1
ENSSSCG00000006021
ENSG00000164794
Potassium voltage-gated channel modifier subfamily V member 1
Tissue enriched
Detected in some
brain:
25.4
KCTD13
ENSSSCG00000040888
ENSG00000174943
Potassium channel tetramerization domain containing 13
Tissue enhanced
Detected in all
brain:
23.3
KCTD16
ENSSSCG00000032826
ENSG00000183775
Potassium channel tetramerization domain containing 16
Tissue enhanced
Detected in many
brain:
24.2
choroid plexus:
19.7
male glands:
26.2
salivary gland:
16.0
KCTD17
ENSSSCG00000000135
ENSG00000100379
Potassium channel tetramerization domain containing 17
Tissue enhanced
Detected in many
brain:
47.4
stomach:
34.6
KHDRBS2
ENSSSCG00000001490
ENSG00000112232
KH RNA binding domain containing, signal transduction associated 2
Tissue enhanced
Detected in some
brain:
15.2
retina:
5.5
KIAA0895L
ENSSSCG00000032443
ENSG00000196123
KIAA0895 like
Low tissue specificity
Detected in all
KIF3B
ENSSSCG00000007247
ENSG00000101350
Kinesin family member 3B
Low tissue specificity
Detected in all
KLHL15
ENSSSCG00000027652
ENSG00000174010
Kelch like family member 15
Low tissue specificity
Detected in all
KLHL2
ENSSSCG00000008858
ENSG00000109466
Kelch like family member 2
Tissue enhanced
Detected in all
brain:
40.9
KLHL25
ENSSSCG00000002258
ENSG00000183655
Kelch like family member 25
Tissue enriched
Detected in many
lens:
96.2
KPNA7
ENSSSCG00000007607
ENSG00000185467
Importin subunit alpha-8
Tissue enhanced
Detected in some
epididymis:
8.6
KRT27
ENSSSCG00000017462
ENSG00000171446
Keratin, type I cytoskeletal 27
Group enriched
Detected in many
brain:
37.1
skin:
80.0
LAMP5
ENSSSCG00000007062
ENSG00000125869
Lysosomal associated membrane protein family member 5
Tissue enriched
Detected in some
brain:
55.1
LANCL2
ENSSSCG00000023801
ENSG00000132434
LanC like 2
Low tissue specificity
Detected in all
LHX2
ENSSSCG00000005586
ENSG00000106689
LIM/homeobox protein Lhx2
Tissue enhanced
Detected in some
brain:
29.0
pituitary gland:
11.4
retina:
10.0
skin:
21.3
LIN7A
ENSSSCG00000040348
ENSG00000111052
Lin-7 homolog A, crumbs cell polarity complex component
Tissue enhanced
Detected in all
testis:
45.9
LNP1
ENSSSCG00000011964
ENSG00000206535
Leukemia NUP98 fusion partner 1
Group enriched
Detected in some
brain:
8.6
heart:
29.0
retina:
21.1
LNX1
ENSSSCG00000008838
ENSG00000072201
Ligand of numb-protein X 1
Tissue enhanced
Detected in many
brain:
26.7
male glands:
27.7
LPCAT4
ENSSSCG00000002235
ENSG00000176454
Lysophospholipid acyltransferase LPCAT4
Low tissue specificity
Detected in all
LRFN2
ENSSSCG00000001597
ENSG00000156564
Leucine rich repeat and fibronectin type III domain containing 2
Tissue enhanced
Detected in many
brain:
11.4
retina:
20.9
LRP8
ENSSSCG00000003848
ENSG00000157193
Low-density lipoprotein receptor-related protein 8 precursor
Tissue enhanced
Detected in many
brain:
30.5
ovary:
21.9
LRRC4
ENSSSCG00000016589
ENSG00000128594
Leucine rich repeat containing 4
Tissue enhanced
Detected in all
brain:
32.3
LRRC73
ENSSSCG00000001676
ENSG00000204052
Leucine rich repeat containing 73
Tissue enhanced
Detected in some
brain:
14.7
testis:
18.7
LRRTM2
ENSSSCG00000034989
ENSG00000146006
Leucine rich repeat transmembrane neuronal 2
Tissue enhanced
Detected in all
brain:
24.5
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